Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G396400.3 | Wheat | nucleus | 98.49 | 98.64 |
| TraesCS5B01G391500.1 | Wheat | nucleus | 97.74 | 97.89 |
| HORVU5Hr1G094950.6 | Barley | cytosol, nucleus | 94.87 | 94.59 |
| EER93461 | Sorghum | nucleus | 78.58 | 79.06 |
| Os03t0748000-01 | Rice | plasma membrane | 77.22 | 77.46 |
| Zm00001d034005_P003 | Maize | plasma membrane | 76.92 | 77.27 |
| CDY57677 | Canola | mitochondrion | 13.27 | 51.46 |
| VIT_06s0004g00200.t01 | Wine grape | nucleus | 54.3 | 51.06 |
| GSMUA_Achr4P14820_001 | Banana | cytosol | 25.19 | 50.45 |
| KRH43005 | Soybean | nucleus | 52.04 | 48.8 |
| KRH59123 | Soybean | nucleus | 51.73 | 48.45 |
| GSMUA_Achr7P27220_001 | Banana | cytosol | 48.27 | 48.41 |
| Solyc01g028860.2.1 | Tomato | nucleus | 49.62 | 46.6 |
| Bra004105.1-P | Field mustard | nucleus | 27.6 | 46.21 |
| CDY69959 | Canola | nucleus | 27.75 | 46.12 |
| TraesCS4A01G031600.2 | Wheat | cytosol | 50.38 | 45.82 |
| CDY50867 | Canola | nucleus | 27.6 | 45.75 |
| CDY42891 | Canola | nucleus | 27.6 | 45.75 |
| VIT_08s0007g07450.t01 | Wine grape | cytosol | 47.81 | 45.68 |
| AT1G55500.5 | Thale cress | cytosol | 41.63 | 45.62 |
| CDY07437 | Canola | nucleus | 28.96 | 45.61 |
| PGSC0003DMT400061684 | Potato | endoplasmic reticulum, plasma membrane | 50.53 | 45.52 |
| CDY21154 | Canola | nucleus | 27.9 | 45.45 |
| CDY39299 | Canola | nucleus | 28.96 | 45.39 |
| CDY50448 | Canola | cytosol | 17.35 | 45.1 |
| Bra036423.1-P | Field mustard | nucleus | 27.6 | 45.07 |
| Bra008509.1-P | Field mustard | cytosol | 28.66 | 44.92 |
| Bra031960.1-P | Field mustard | nucleus | 26.7 | 44.7 |
| CDY29972 | Canola | nucleus | 27.45 | 44.39 |
| CDX82538 | Canola | nucleus | 42.84 | 44.38 |
| CDY24182 | Canola | nucleus | 36.2 | 44.36 |
| CDY52966 | Canola | cytosol | 29.86 | 44.2 |
| CDX91541 | Canola | mitochondrion | 10.86 | 44.17 |
| Bra001506.1-P | Field mustard | nucleus | 42.53 | 44.13 |
| CDX75712 | Canola | nucleus | 42.08 | 44.01 |
| CDY56132 | Canola | nucleus | 29.56 | 43.85 |
| CDY43989 | Canola | nucleus | 41.78 | 43.69 |
| AT3G13460.1 | Thale cress | cytosol | 43.89 | 43.63 |
| CDY23602 | Canola | nucleus | 41.03 | 43.59 |
| Bra027432.1-P | Field mustard | nucleus | 41.63 | 43.53 |
| AT3G03950.3 | Thale cress | cytosol | 28.05 | 43.46 |
| CDY07089 | Canola | nucleus | 41.48 | 43.24 |
| Bra039400.1-P | Field mustard | nucleus | 40.87 | 42.61 |
| TraesCS5A01G431200.1 | Wheat | nucleus | 37.41 | 42.11 |
| AT5G61020.1 | Thale cress | cytosol | 30.62 | 41.01 |
| KRG94807 | Soybean | nucleus | 39.97 | 40.21 |
| KRH70155 | Soybean | nucleus | 37.41 | 39.37 |
| KRH06717 | Soybean | nucleus | 38.91 | 38.91 |
| TraesCS5A01G431100.1 | Wheat | cytosol | 37.41 | 38.63 |
| Bra018951.1-P | Field mustard | cytosol | 14.93 | 38.22 |
| Bra014253.1-P | Field mustard | cytosol | 16.74 | 37.25 |
| Bra038524.1-P | Field mustard | cytosol | 12.37 | 36.44 |
| TraesCS1A01G044500.1 | Wheat | nucleus | 31.52 | 32.55 |
| TraesCS7A01G276800.3 | Wheat | nucleus | 30.62 | 32.48 |
| TraesCS7A01G291700.1 | Wheat | cytosol | 28.21 | 31.69 |
| TraesCS3A01G267700.1 | Wheat | nucleus | 29.26 | 28.08 |
| TraesCS4A01G125600.3 | Wheat | cytosol, nucleus, plastid | 27.75 | 25.59 |
| TraesCS2A01G011400.1 | Wheat | nucleus | 26.24 | 24.47 |
| TraesCS3A01G199100.2 | Wheat | cytosol | 23.68 | 22.79 |
| TraesCS1A01G105700.1 | Wheat | cytosol | 20.97 | 19.8 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G386600.2 | EnsemblPlantsGene:TraesCS5A01G386600 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF38 | PFAM:PF04146 |
| PFscan:PS50882 | SEG:seg | MapMan:16.5.2.1 | : | : | : |
Description
No Description!
Coordinates
chr5A:+:584415883..584419681
Molecular Weight (calculated)
71804.5 Da
IEP (calculated)
8.631
GRAVY (calculated)
-0.813
Length
663 amino acids
Sequence
(BLAST)
(BLAST)
001: MVYGSANAGN GQGAGLHVDM QKLSLEGKKD AAGAADAAKP SGMQYGSANT GNSQTVEPHV DRSITPLLQE AMDPNFFYQP NGYPSPAYYY PSGYDGSTNE
101: WDTRYAGHEG MEVPQQSVYG DMYHGYGYAP YGPYPSGSPV PTVGHEGQSY GTQQYQYPGQ YYQQPAPTNA MHGVNSANPQ SELPSAAAHQ PRATVVSAKV
201: TTGTASGIAN AASSLPRKQT HHHVSVTNSG SYGRGPSQGG PSASNFGHTG HRSPAQWYDG PVYSNGHQGS IASSTSYGSN SSSAKNQSHR PTTNLMGMHT
301: HVPSSGMGLT SPSYSSRMYP DSRLYGQYGQ YGNTLKAGLG FGSNVYNSRN NGQWGVVDTV KYKPRNRATF GFGSENQDGF TELNRGPRSG GFRHQKPFGP
401: TVTIAVKGQV LPSAGKQENS VLPDKSQFNQ EGFSATYKDA KFFVIKSYSE DDVHKSIKYN VWASTPNGNK KLDAGYREAQ EKSSECPVFL FFSVNTSGQF
501: VGVAEMVGPV DFDKTVDYWQ QDKWNGCFSI KWHIVKDIPN NILKHITLDN NDNKPVTNSR DTQEVKLEQG LQMLKIFKEH VSKTSILDDF AFYENRQKLM
601: QEKRAKQQPL QGQGVDEKEK SAVNGNSAAQ KQTPSKESTA PAIGEEPNAS KPTTAESGVA SAN
101: WDTRYAGHEG MEVPQQSVYG DMYHGYGYAP YGPYPSGSPV PTVGHEGQSY GTQQYQYPGQ YYQQPAPTNA MHGVNSANPQ SELPSAAAHQ PRATVVSAKV
201: TTGTASGIAN AASSLPRKQT HHHVSVTNSG SYGRGPSQGG PSASNFGHTG HRSPAQWYDG PVYSNGHQGS IASSTSYGSN SSSAKNQSHR PTTNLMGMHT
301: HVPSSGMGLT SPSYSSRMYP DSRLYGQYGQ YGNTLKAGLG FGSNVYNSRN NGQWGVVDTV KYKPRNRATF GFGSENQDGF TELNRGPRSG GFRHQKPFGP
401: TVTIAVKGQV LPSAGKQENS VLPDKSQFNQ EGFSATYKDA KFFVIKSYSE DDVHKSIKYN VWASTPNGNK KLDAGYREAQ EKSSECPVFL FFSVNTSGQF
501: VGVAEMVGPV DFDKTVDYWQ QDKWNGCFSI KWHIVKDIPN NILKHITLDN NDNKPVTNSR DTQEVKLEQG LQMLKIFKEH VSKTSILDDF AFYENRQKLM
601: QEKRAKQQPL QGQGVDEKEK SAVNGNSAAQ KQTPSKESTA PAIGEEPNAS KPTTAESGVA SAN
001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC
Arabidopsis Description
ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.