CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91541	Canola	mitochondrion	64.91	68.1
CDY50448	Canola	cytosol	82.46	55.29
Bra038524.1-P	Field mustard	cytosol	71.34	54.22
Bra018951.1-P	Field mustard	cytosol	80.12	52.9
Bra014253.1-P	Field mustard	cytosol	88.3	50.67
CDY07437	Canola	nucleus	74.85	30.4
CDY39299	Canola	nucleus	74.27	30.02
CDY56132	Canola	nucleus	71.34	27.29
CDY52966	Canola	cytosol	70.76	27.01
CDY51902	Canola	cytosol	23.39	25.81
AT5G61020.1	Thale cress	cytosol	60.23	20.81
GSMUA_Achr4P14820_001	Banana	cytosol	39.77	20.54
CDY21154	Canola	nucleus	47.37	19.9
CDY69959	Canola	nucleus	46.2	19.8
CDY29972	Canola	nucleus	46.78	19.51
CDY50867	Canola	nucleus	45.03	19.25
CDY42891	Canola	nucleus	45.03	19.25
CDY22270	Canola	cytosol	46.78	17.86
CDY05744	Canola	cytosol	12.87	17.46
CDY56809	Canola	cytosol	45.61	17.41
CDX87395	Canola	cytosol	45.03	17.34
CDX88524	Canola	cytosol	44.44	17.19
CDY24182	Canola	nucleus	53.22	16.82
TraesCS5A01G431200.1	Wheat	nucleus	53.8	15.62
EER93313	Sorghum	cytosol	52.05	15.56
CDX68000	Canola	nucleus	46.2	15.52
CDX79309	Canola	nucleus	46.2	15.52
TraesCS5D01G439100.1	Wheat	nucleus	52.63	15.31
Os07t0170300-01	Rice	plasma membrane	53.22	15.12
GSMUA_Achr7P01490_001	Banana	nucleus	48.54	14.82
TraesCS5B01G433000.1	Wheat	cytosol	51.46	14.77
CDY23602	Canola	nucleus	53.8	14.74
CDX94944	Canola	nucleus	42.69	14.69
CDX75712	Canola	nucleus	54.39	14.67
CDY07089	Canola	nucleus	54.39	14.62
CDX82538	Canola	nucleus	54.39	14.53
CDY43989	Canola	nucleus	53.8	14.51
CDX93476	Canola	nucleus	42.11	14.4
CDX90116	Canola	nucleus	43.86	14.4
CDY67303	Canola	nucleus	43.86	14.4
TraesCS5D01G439200.1	Wheat	cytosol	52.63	14.02
TraesCS5A01G431100.1	Wheat	cytosol	52.63	14.02
HORVU5Hr1G104380.1	Barley	plastid	53.8	13.92
TraesCS5B01G432900.2	Wheat	extracellular	52.63	13.89
CDY24224	Canola	nucleus	49.71	13.84
KXG34475	Sorghum	cytosol	52.05	13.78
CDY23562	Canola	nucleus	49.71	13.71
CDY44025	Canola	nucleus	49.71	13.67
KRH70155	Soybean	nucleus	50.29	13.65
Zm00001d034005_P003	Maize	plasma membrane	52.63	13.64
CDY60520	Canola	cytosol	10.53	13.64
VIT_08s0007g07450.t01	Wine grape	cytosol	54.97	13.54
CDY43378	Canola	nucleus	48.54	13.52
EER93461	Sorghum	nucleus	52.05	13.51
GSMUA_Achr4P22630_001	Banana	nucleus	48.54	13.37
CDY11758	Canola	nucleus, plastid	43.27	13.36
Zm00001d007890_P002	Maize	mitochondrion	50.88	13.32
TraesCS5A01G386600.2	Wheat	nucleus	51.46	13.27
HORVU5Hr1G094950.6	Barley	cytosol, nucleus	51.46	13.23
CDY58572	Canola	nucleus	39.18	13.21
GSMUA_Achr4P28430_001	Banana	nucleus, plastid	47.37	13.17
GSMUA_Achr5P02830_001	Banana	cytosol	47.37	13.15
TraesCS5D01G396400.3	Wheat	nucleus	50.88	13.14
TraesCS5B01G391500.1	Wheat	nucleus	50.88	13.14
CDX88661	Canola	nucleus	39.18	13.14
Os03t0748000-01	Rice	plasma membrane	50.29	13.01
GSMUA_Achr7P27220_001	Banana	cytosol	50.29	13.01
GSMUA_Achr4P21380_001	Banana	nucleus	49.71	12.92
CDX93645	Canola	nucleus	46.2	12.91
KRG94807	Soybean	nucleus	49.71	12.9
KRH06717	Soybean	nucleus	49.71	12.82
HORVU5Hr1G104390.3	Barley	plastid	51.46	12.79
Os03t0158500-01	Rice	nucleus	52.05	12.59
CDY32718	Canola	nucleus	38.6	12.48
CDY43306	Canola	cytosol	44.44	12.4
CDY02802	Canola	nucleus	38.6	12.36
Zm00001d018896_P002	Maize	mitochondrion	50.88	12.32
KXG40139	Sorghum	plastid	50.29	12.1
TraesCS4D01G273200.4	Wheat	cytosol	49.71	11.76
TraesCS4A01G031600.2	Wheat	cytosol	49.71	11.66
Zm00001d048424_P003	Maize	plastid	50.29	11.62
HORVU4Hr1G072940.4	Barley	cytosol	49.71	11.46
TraesCS4B01G274500.2	Wheat	plastid	49.71	11.08
Zm00001d027731_P012	Maize	plastid	50.29	10.71

Protein Annotations

EnsemblPlants:CDY57677	EnsemblPlantsGene:GSBRNA2T00022528001	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF56	PFAM:PF04146
PFscan:PS50882	ProteinID:CDY57677	ProteinID:CDY57677.1	UniParc:UPI0004EE3655	UniProt:A0A078IZ66	MapMan:16.5.2.1

Description

BnaC01g42630DBnaC01g42630D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZ66]

Coordinates

chrLK033595:-:11561..13785

Molecular Weight (calculated)

18849.4 Da

IEP (calculated)

8.828

GRAVY (calculated)

-0.442

Length

171 amino acids

Sequence
(BLAST)

001: MIKTKIVART TLNKTRASCI HKSIKYNVWS STSNGNKKLN AAYNEAAGDK SSCPVFLIFS VNTSGQFVGL AEMMAECWQQ DKWVGCFPVK CLVKDIPNSS
101: LRHIMLENNE NKHVTNSRDT QEVKIEQGVK QSFTASDKKA TPKDKSKETS VIAEVAEEIS QNGVAEVAST C

Best Arabidopsis Sequence Match ( AT3G13460.1 )
(BLAST)

001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC

Arabidopsis Description

ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.