Factsheet for GSMUA_Achr7P01490_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P25010_001
GSMUA_Achr3P13480_001
GSMUA_Achr8P10920_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13460.1	GSMUA_Achr11P...	AT3G17510.1	16113215
AT3G13460.1	GSMUA_Achr11P...	AT3G17510.1	16113215
AT3G13460.1	GSMUA_Achr1P25010_001	AT3G17510.1	16113215
AT3G13460.1	GSMUA_Achr3P13480_001	AT3G17510.1	16113215
AT3G13460.1	GSMUA_Achr8P10920_001	AT3G17510.1	16113215
AT3G13460.1	GSMUA_AchrUn_...	AT3G17510.1	16113215

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P22630_001	Banana	nucleus	82.5	74.4
GSMUA_Achr4P21380_001	Banana	nucleus	81.61	69.45
GSMUA_Achr5P02830_001	Banana	cytosol	76.07	69.16
GSMUA_Achr4P28430_001	Banana	nucleus, plastid	75.18	68.46
GSMUA_Achr7P27220_001	Banana	cytosol	58.93	49.92
VIT_06s0004g00200.t01	Wine grape	nucleus	61.96	49.22
CDY57677	Canola	mitochondrion	14.82	48.54
VIT_08s0007g07450.t01	Wine grape	cytosol	59.82	48.27
GSMUA_Achr4P14820_001	Banana	cytosol	28.39	48.04
Solyc01g028860.2.1	Tomato	nucleus	58.75	46.6
KRH43005	Soybean	nucleus	58.75	46.53
KRH59123	Soybean	nucleus	58.39	46.19
CDY21154	Canola	nucleus	32.68	44.96
PGSC0003DMT400061684	Potato	endoplasmic reticulum, plasma membrane	58.75	44.7
Bra031960.1-P	Field mustard	nucleus	31.61	44.7
Bra036423.1-P	Field mustard	nucleus	32.32	44.58
CDY69959	Canola	nucleus	31.61	44.36
CDY50448	Canola	cytosol	20.18	44.31
CDY42891	Canola	nucleus	31.61	44.25
CDY50867	Canola	nucleus	31.61	44.25
AT1G55500.5	Thale cress	cytosol	47.68	44.13
CDY29972	Canola	nucleus	31.79	43.41
CDX75712	Canola	nucleus	48.93	43.22
AT3G13460.1	Thale cress	cytosol	51.43	43.18
CDY07437	Canola	nucleus	32.32	42.99
Bra004105.1-P	Field mustard	nucleus	30.36	42.93
CDY52966	Canola	cytosol	34.29	42.86
Bra008509.1-P	Field mustard	cytosol	32.32	42.79
Bra001506.1-P	Field mustard	nucleus	48.75	42.72
CDX82538	Canola	nucleus	48.75	42.66
CDY56132	Canola	nucleus	33.93	42.51
CDY39299	Canola	nucleus	31.79	42.08
AT3G03950.3	Thale cress	cytosol	31.96	41.82
CDY43989	Canola	nucleus	47.14	41.64
CDY23602	Canola	nucleus	46.25	41.51
Bra027432.1-P	Field mustard	nucleus	46.96	41.48
CDY24182	Canola	nucleus	40.0	41.4
Bra039400.1-P	Field mustard	nucleus	46.61	41.04
CDY07089	Canola	nucleus	46.43	40.88
CDX91541	Canola	mitochondrion	11.79	40.49
AT5G61020.1	Thale cress	cytosol	35.0	39.6
KRG94807	Soybean	nucleus	46.25	39.3
KRH06717	Soybean	nucleus	46.43	39.22
KRH70155	Soybean	nucleus	42.32	37.62
GSMUA_Achr6P12810_001	Banana	nucleus	23.21	36.93
GSMUA_Achr1P10560_001	Banana	nucleus	29.29	36.85
Bra018951.1-P	Field mustard	cytosol	15.18	32.82
Bra014253.1-P	Field mustard	cytosol	17.32	32.55
GSMUA_Achr4P12480_001	Banana	cytosol	33.21	32.01
Bra038524.1-P	Field mustard	cytosol	12.86	32.0
GSMUA_Achr4P11560_001	Banana	nucleus	36.61	31.59
GSMUA_Achr6P26690_001	Banana	cytosol	33.75	31.03
GSMUA_Achr9P06180_001	Banana	endoplasmic reticulum, plasma membrane	32.86	29.73
GSMUA_Achr4P04600_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	37.14	26.98
GSMUA_Achr1P24980_001	Banana	nucleus	33.39	22.53
GSMUA_Achr8P29890_001	Banana	cytosol	30.54	21.09

Protein Annotations

EnsemblPlants:GSMUA_Achr7P01490_001	EnsemblPlants:GSMUA_Achr7T01490_001	EnsemblPlantsGene:GSMUA_Achr7G01490_001	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF63
PFAM:PF04146	PFscan:PS50882	SEG:seg	UniParc:UPI0002965CDC	UniProt:M0TDT9	MapMan:16.5.2.1

Description

YT521-B-like family domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr7G01490_001]

Coordinates

chr7:-:1180638..1184934

Molecular Weight (calculated)

62102.7 Da

IEP (calculated)

7.690

GRAVY (calculated)

-0.694

Length

560 amino acids

Sequence
(BLAST)

001: MAAVAPATPA DSATDLMQKL SLDPKDQSND ASDVIKKPSG VQYGSASGGE LPMAPIPTAE RSLTPLLHEH MDASMCYIPN GYASSFYYGG YDGSMTEWED
101: YPRYVTPNGV EVPPLGVYGD MYQHGYGYAP YSQYPSPGST VPTLAHNSQL YGPQHYQYPA TYYQPPIPTG APYKTNQIPI SEGEVSTSAA ADLPPIPTRP
201: GQQNSSLNPG ISFGKGALSG GLPSSGYQDP RFGFDGVNQN FRPLPHLMGM HSPRPAGPGT ANKMYPNNRM YGQNANGFGN GHGFCSNMYD SRMNGRWGMS
301: VDSKYKPRAR GNGFYGYGND NLDGLSELNK GPRAGRFRNQ RGFGPTITLA VRGQSLPENV NVQDSTVIPE GDQYNKTDFP ETYSDAKFFI IKSYSEDDIH
401: KSIKYNVWAS TLHGNKKLDA AYLESKEKTS GCPIFLFFSV NTSGQFVGVA EMVGPVDFNK TLDFWQQDKW IGCFPVKWHI VKDVPNSILK HIKVENNDNK
501: PVTNSRDTQE VKLEQGLQLL KLFKEHVRKT SILDDFSFYE TRQNVMQEKR RKQEQFQKKA

Best Arabidopsis Sequence Match ( AT3G13460.1 )
(BLAST)

001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC

Arabidopsis Description

ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.