Factsheet for GSMUA_Achr1P24980_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P29890_001	Banana	cytosol	62.05	63.5
KRH36908	Soybean	cytosol	26.51	49.55
VIT_05s0020g00460.t01	Wine grape	cytosol	34.1	39.64
KRH02430	Soybean	cytosol	32.41	38.76
Bra018708.1-P	Field mustard	nucleus	27.95	38.16
AT3G17330.1	Thale cress	nucleus	27.35	38.15
KRH50636	Soybean	cytosol	31.81	37.99
CDY43306	Canola	cytosol	27.95	37.85
CDX93645	Canola	nucleus	27.83	37.75
GSMUA_Achr4P14820_001	Banana	cytosol	14.82	37.16
Solyc12g099090.1.1	Tomato	cytosol	30.36	36.52
PGSC0003DMT400011739	Potato	cytosol	30.48	36.19
AT1G48110.2	Thale cress	nucleus	27.83	36.15
GSMUA_Achr6P12810_001	Banana	nucleus	15.3	36.08
KRH11876	Soybean	endoplasmic reticulum	29.76	35.24
Os03t0317000-01	Rice	plasma membrane	29.88	34.98
GSMUA_Achr1P10560_001	Banana	nucleus	18.19	33.93
TraesCS4D01G180500.5	Wheat	cytosol, nucleus, plastid	28.92	33.66
TraesCS4B01G179100.3	Wheat	cytosol, nucleus, plastid	28.92	33.61
GSMUA_Achr7P01490_001	Banana	nucleus	22.53	33.39
TraesCS4A01G125600.3	Wheat	cytosol, nucleus, plastid	28.8	33.24
GSMUA_Achr4P12480_001	Banana	cytosol	22.17	31.67
HORVU4Hr1G052390.3	Barley	golgi	28.07	31.07
GSMUA_Achr4P22630_001	Banana	nucleus	23.01	30.76
GSMUA_Achr9P06180_001	Banana	endoplasmic reticulum, plasma membrane	22.53	30.21
GSMUA_Achr7P27220_001	Banana	cytosol	23.98	30.11
GSMUA_Achr4P21380_001	Banana	nucleus	23.37	29.48
GSMUA_Achr5P02830_001	Banana	cytosol	21.81	29.38
GSMUA_Achr6P26690_001	Banana	cytosol	21.45	29.23
GSMUA_Achr4P11560_001	Banana	nucleus	22.65	28.97
GSMUA_Achr4P28430_001	Banana	nucleus, plastid	20.72	27.97
GSMUA_Achr4P04600_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	22.53	24.25

Protein Annotations

EnsemblPlants:GSMUA_Achr1P24980_001	EnsemblPlants:GSMUA_Achr1T24980_001	EnsemblPlantsGene:GSMUA_Achr1G24980_001	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF22
PFAM:PF04146	PFscan:PS50882	SEG:seg	UniParc:UPI0002964C4A	UniProt:M0S2V5	MapMan:16.5.2.1

Description

ECT protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G24980_001]

Coordinates

chr1:+:19367432..19372078

Molecular Weight (calculated)

89620.6 Da

IEP (calculated)

7.306

GRAVY (calculated)

-0.669

Length

830 amino acids

Sequence
(BLAST)

001: MGNQLPPEYV FDQGLSYSAA DSYGYLCTGY ESPGEWGDHH SIFGLDGHDM HYMGLQAENV PYVYYTPGYG YAQSPFNQCT PYIPSAVTGL DGPYVGAQQY
101: MNIPSYRPPI SSPAYIPVIV QPSPDFMTNN TIDPAFLGAG AIATRPVNAG VKNTPPQASV SAAASSRLAA SMTPFVMSDE SHPSHKNQAA AKPFEGSQIN
201: IPPSNQFALQ EAVMYGSGTH GHQGVGPDLM QSTYQFSHGR VPSIQNYVKV AAPSNSGLTN RGSNVLGLTG WDEQRRGPQF QGIAIDAGRN PDVLAEQNKG
301: PRTNRPKDQF SLSGLESSES IQKSASDGQG GCIIIDPDHY NKDDFPVDYP DARFFVIKSY SEDDVHKSIK YNVWSSTHNG NRRLDGAYED AQSKSVGRPR
401: KCPVFLFFSV NASGQFCGLA EMVGPVDFDK DMNFWQQDKW SGSFPVKWHI IKDVPNSSLR HIILENNENK PVTNSRDTQE IPYSAGIDML KIFKTSLLKT
501: SILDDFMFYE ERQKKMLEDK FRHLGSSYNT YVPAFVSVSG PADKAGQPSG EDGNQPSGTG KITQAVGHQT ISESEQSSKY KEKLQDDTNS RPSKVVGEHS
601: GVTVGQSQKT DGKQSSVAIS LSTNADGKCL TDTKDPPPIA NGVQPNKVVR PPNADAKSRP ANRPPKSDGK ESSLVMNQLP KAEIEPRSLE VPPQADGKQT
701: KWKISQPPKS DGNPARAKDV NGVGKGGPGG EQFKEKTQLA SESSAATDHK GTNVVSKAGA PSLGPKLRAA KSPGTMEPEV ISPDFVKVGS VPIKVKDLGE
801: SSMVMSVGTL PTDSKGPKPS KKADSQQPKK

Best Arabidopsis Sequence Match ( AT3G17330.2 )
(BLAST)

001: MVSNSSTDSL VANGGQSDGR GSMQRNGSAI AGLPKDAPKS TTTGQYKQPG IPKNVSTTAS AHSLQGKTAY ANTLLPYGKS DIANGVSSIA SYSYKPCSKI
101: YDARGDNNTT GSTYTSEQNR GSRTRRSRNQ LIVKAYTTKA GNADAEGNIV INPDRYNKED FSIEYSDARF FVIKSYSEDD VHKSIKYGVW SSTLNGNKKL
201: QSVYEDAQRI ATEKSRECPI FLFFSVNSSG LFCGVAEMTG PVSFDRDMDF WQQDKWSGSF PVKWHIIKDV PNSYFRHIIL HNNENKPVTN SRDTQEIILK
301: QGLEVLKLFK HHAEKTSLLD DFMYYEDRQR LMQEERARLP FRTFRRPFPV LNLDFSDRSK KSSKDVVKKP SVTSAETKVV QLKNSDGDEK SNTQEATDDS
401: TPSTLKFGSL AIKPTAGTTF NPTQPKPKPT PSLGSDHKSD SSEEVTGSLA DDIVSVGSLP IKVKGSKELS SKIAAVGTSP LSTQDQFRSK PGF

Arabidopsis Description

ECT6At3g17330 [Source:UniProtKB/TrEMBL;Acc:Q1JPL5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.