Factsheet for GSMUA_Achr4P12480_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P11560_001	Banana	nucleus	67.99	60.86
CDY51902	Canola	cytosol	15.49	58.06
GSMUA_Achr4P04600_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	68.33	51.49
Os08t0556000-01	Rice	nucleus	53.18	49.52
TraesCS1D01G045100.1	Wheat	nucleus	53.18	48.13
TraesCS1A01G044500.1	Wheat	nucleus	53.01	47.98
HORVU1Hr1G008330.2	Barley	nucleus	53.01	47.98
VIT_09s0054g01600.t01	Wine grape	nucleus	54.73	47.75
KXG25412	Sorghum	cytosol	52.32	47.57
TraesCS1B01G057800.3	Wheat	nucleus	52.5	47.51
Bra034710.1-P	Field mustard	nucleus	47.85	46.8
TraesCS7A01G276800.3	Wheat	nucleus	50.26	46.72
TraesCS7D01G276800.4	Wheat	nucleus	49.91	46.4
Zm00001d031981_P002	Maize	cytosol	51.12	45.62
KRH46969	Soybean	endoplasmic reticulum, extracellular	50.77	45.6
TraesCS7B01G174500.1	Wheat	nucleus	46.99	45.58
CDY23562	Canola	nucleus	48.36	45.32
KRH44697	Soybean	mitochondrion	51.29	45.29
CDY44025	Canola	nucleus	48.36	45.18
VIT_01s0010g03690.t01	Wine grape	cytosol	43.37	44.06
AT3G13060.2	Thale cress	nucleus	48.02	44.01
CDY24224	Canola	nucleus	45.96	43.49
Bra039366.1-P	Field mustard	nucleus	44.92	43.43
CDY43378	Canola	nucleus	45.27	42.83
GSMUA_Achr1P10560_001	Banana	nucleus	32.19	42.02
HORVU7Hr1G058250.46	Barley	cytosol, plastid	30.81	37.76
AT5G58190.2	Thale cress	nucleus	33.22	36.55
Bra006780.1-P	Field mustard	cytosol	31.84	36.35
CDY58572	Canola	nucleus	31.33	35.9
CDX88661	Canola	nucleus	31.15	35.49
CDY02802	Canola	nucleus	32.01	34.83
CDY32718	Canola	nucleus	31.67	34.78
CDY67303	Canola	nucleus	30.46	33.97
CDX90116	Canola	nucleus	30.46	33.97
Bra010911.1-P	Field mustard	nucleus	30.46	33.97
GSMUA_Achr6P12810_001	Banana	nucleus	20.48	33.81
GSMUA_Achr4P22630_001	Banana	nucleus	35.8	33.49
Solyc05g032850.2.1	Tomato	nucleus	34.77	33.44
Bra020382.1-P	Field mustard	nucleus	31.67	33.27
GSMUA_Achr7P01490_001	Banana	nucleus	32.01	33.21
GSMUA_Achr4P14820_001	Banana	cytosol	18.76	32.93
CDY11758	Canola	nucleus, plastid	30.98	32.49
AT1G27960.1	Thale cress	cytosol	29.95	32.28
VIT_11s0065g00160.t01	Wine grape	nucleus	39.59	31.29
GSMUA_Achr5P02830_001	Banana	cytosol	32.36	30.52
GSMUA_Achr4P28430_001	Banana	nucleus, plastid	32.19	30.41
GSMUA_Achr4P21380_001	Banana	nucleus	34.25	30.24
GSMUA_Achr7P27220_001	Banana	cytosol	33.39	29.35
GSMUA_Achr9P06180_001	Banana	endoplasmic reticulum, plasma membrane	30.29	28.43
GSMUA_Achr6P26690_001	Banana	cytosol	29.09	27.75
GSMUA_Achr1P24980_001	Banana	nucleus	31.67	22.17
GSMUA_Achr8P29890_001	Banana	cytosol	29.78	21.33

Protein Annotations

EnsemblPlants:GSMUA_Achr4P12480_001	EnsemblPlants:GSMUA_Achr4T12480_001	EnsemblPlantsGene:GSMUA_Achr4G12480_001	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF57
PFAM:PF04146	PFscan:PS50882	SEG:seg	UniParc:UPI00029521A3	UniProt:M0SNB3	MapMan:16.5.2.1

Description

ECT5, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G12480_001]

Coordinates

chr4:+:9254335..9262039

Molecular Weight (calculated)

64785.2 Da

IEP (calculated)

6.084

GRAVY (calculated)

-0.639

Length

581 amino acids

Sequence
(BLAST)

001: MDTSRDAHGH LVSSDIVIDH NAVYQSNIFA PHAHSFFYGG YENLIGDWED QSRYVNVEGV EFGLAGVYNE NPSLVYHTGY GYSPYGPYSP GMTPLTSLSG
101: DGQLYSPHQF QFPGAYYQQS APPNMPYLSS STPIPRVDLA VPIDQQGVFT SDTSNFNTQM FGPRPDLTRA PDGTGSVTPL SLPTVSVSPQ PIGGLMPFGQ
201: GAMPITSGMG SQQQRSLYGF GSSISSIDRG YSHSGHYHNS TFETSIPSLG IKDQSSFVMD KNRRGGKEST LLCSCNGTVD FLNEQNRGPR ANRSKIQMIE
301: CNSSLDTEKD SSTTGVDHKL YNSPDFVTEH KDAMFFIIKS YSEDNVHKSI KYGVWASTSS GNRKLDSAYH EAKQKEDPCP VFLFFSVNAS AHFCGVSEMI
401: GPVDFEKSVD YWQQDRWSGQ FPVKWHMVKD VPNNLFRHII LENNENKPVT NSRDTQEVKL EKGLEMLGIF KKHEYEVSII DDFEFYEERE KAMQERKARK
501: HHQMYNSAGP VRAAFRNEQR NPPAISGDFI NRLSKNFISA VRLEERNNAD PATDKNSSLS VSVAPKPDEL QKSETTPATS S

Best Arabidopsis Sequence Match ( AT3G13060.2 )
(BLAST)

001: MATTQSHTSD LTSEEQPASL DIMKEQTVPA NNETSASFKS SQEAPVVVHP AKVAPLTGPY GLAGDFAGHL PSSILSPQAQ GFYYRGYENP TGEWDEYSSY
101: VNVEGLDITS PVGFNENASL VYQTGYGYNP QMPYGPYSPA ASPLPSEGQL YSPQQFPFSG ASPYYQQVVP PSMQYITSPT QPELTSLVGV DQQGDNIGPR
201: QSYHPHPIGP FNGNQPNLGF PEWQQGFDGG IWSDWSKPSD MHRHSSSISP ALSPQPLGSY GSYGQNIPMG SQRQRSFYGF GSGSNSYNRG YMHSGGRGQG
301: SNYGSRLISN VGMGNQGWIG VDNSRGRGRV SDPSLGGAYN GTFDILNEQN RGPRASKPKT QVLEELDSAA DSKKNNKGSA KEHEESNNAD FVTDYTNAKL
401: FIIKSYSEDN VHKSIKYNVW ASTPNGNKKL DAAYREAKDE KEPCPLFLLF SVNASSQFCG VAEMVGPVDF EKSVDYWQQD KWSGQFPVKW HIIKDVPNSQ
501: FRHIILENND NKPVTNSRDT QEVKLEQGIE MLKIFKNYDA DTSILDDFGF YEEREKIIQD RKARRQPSLP SAGVVAGENE HKPASAALPT DFMKNMSKSF
601: AQVVRLDEGS KEAVKASSSP DAITTAAVSS GQSN

Arabidopsis Description

ECT5Evolutionarily conserved C-terminal region 5 [Source:UniProtKB/TrEMBL;Acc:Q0WR25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.