Factsheet for Bra034710.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plasma membrane 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
EpiLoc:	plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44025	Canola	nucleus	99.16	94.69
CDY23562	Canola	nucleus	97.98	93.87
AT3G13060.2	Thale cress	nucleus	89.9	84.23
Bra039366.1-P	Field mustard	nucleus	85.02	84.03
Zm00001d002008_P001	Maize	cytosol	10.1	82.19
GSMUA_Achr4P12480_001	Banana	cytosol	46.8	47.85
Os08t0556000-01	Rice	nucleus	49.66	47.28
KXG25412	Sorghum	cytosol	50.0	46.48
TraesCS1A01G044500.1	Wheat	nucleus	49.33	45.64
TraesCS1D01G045100.1	Wheat	nucleus	49.16	45.48
HORVU1Hr1G008330.2	Barley	nucleus	49.16	45.48
TraesCS1B01G057800.3	Wheat	nucleus	48.99	45.33
GSMUA_Achr4P11560_001	Banana	nucleus	49.33	45.15
Zm00001d031981_P002	Maize	cytosol	49.16	44.85
TraesCS7B01G174500.1	Wheat	nucleus	45.12	44.74
TraesCS7A01G276800.3	Wheat	nucleus	46.97	44.64
TraesCS7D01G276800.4	Wheat	nucleus	46.8	44.48
EES14722	Sorghum	nucleus	42.59	42.59
Zm00001d049360_P004	Maize	extracellular	41.58	41.44
Os08t0224200-01	Rice	mitochondrion	43.1	41.36
TraesCS7B01G182100.2	Wheat	cytosol	40.74	40.88
Zm00001d024339_P001	Maize	extracellular	40.57	40.71
TraesCS7A01G291700.1	Wheat	cytosol	40.4	40.68
GSMUA_Achr1P10560_001	Banana	nucleus	30.3	40.45
HORVU7Hr1G069070.2	Barley	cytosol	40.07	40.34
Bra004105.1-P	Field mustard	nucleus	26.77	40.15
Bra006780.1-P	Field mustard	cytosol	33.5	39.1
TraesCS7D01G285000.1	Wheat	endoplasmic reticulum	39.9	38.73
Os04t0608800-01	Rice	nucleus	36.87	38.56
Zm00001d008913_P001	Maize	cytosol, nucleus, peroxisome	25.76	38.35
GSMUA_Achr4P04600_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	49.16	37.87
Bra008509.1-P	Field mustard	cytosol	26.94	37.83
Bra036423.1-P	Field mustard	nucleus	25.76	37.68
Bra031960.1-P	Field mustard	nucleus	25.08	37.63
Bra020382.1-P	Field mustard	nucleus	34.34	36.89
HORVU7Hr1G058250.46	Barley	cytosol, plastid	29.12	36.5
Bra010911.1-P	Field mustard	nucleus	31.99	36.47
Bra035104.1-P	Field mustard	cytosol	27.1	36.34
KXG27074	Sorghum	cytosol	33.5	36.05
Bra027432.1-P	Field mustard	nucleus	37.71	35.33
Bra008406.1-P	Field mustard	cytosol	26.6	35.27
Zm00001d002372_P002	Maize	nucleus	32.49	34.96
Bra018951.1-P	Field mustard	cytosol	14.81	33.98
Bra038524.1-P	Field mustard	cytosol	12.63	33.33
Bra039400.1-P	Field mustard	nucleus	35.35	33.02
Bra014253.1-P	Field mustard	cytosol	16.5	32.89
Bra001506.1-P	Field mustard	nucleus	35.35	32.86
Bra003615.1-P	Field mustard	nucleus	27.44	32.02
Zm00001d047072_P001	Maize	mitochondrion	25.59	31.08
Bra019988.1-P	Field mustard	nucleus	24.58	29.14
Bra018708.1-P	Field mustard	nucleus	29.12	28.45

Protein Annotations

EnsemblPlants:Bra034710.1	EnsemblPlants:Bra034710.1-P	EnsemblPlantsGene:Bra034710	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF24
PFAM:PF04146	PFscan:PS50882	SEG:seg	UniParc:UPI0002548175	UniProt:M4F0W5	MapMan:16.5.2.1

Description

AT3G13060 (E=5e-294) ECT5 | ECT5; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: ECT2; protein binding (TAIR:AT3G13460.1); Has 1007 Blast hits to 965 proteins in 147 species: Archae - 0; Bacteria - 8; Metazoa - 528; Fungi - 103; Plants - 235; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).

Coordinates

chrA05:-:21086543..21089025

Molecular Weight (calculated)

65426.2 Da

IEP (calculated)

5.461

GRAVY (calculated)

-0.779

Length

594 amino acids

Sequence
(BLAST)

001: MKEQPVPANN ESSQESTVVV HPAKVAPLSG PYGITGDLAG HLPSSILSPQ AQGFYYTGYE NPTGEWDDYS SYVNVEGLDI TSPVGFNENA SMVYQTGYGY
101: NPQMPYGPYS PAASPLPSEG QLYSPYYQQV VPPSMQYISS PTQPELTSLV GVDQQGDNMG GPRPSYHPHP IGPFNGNQPN LGFPEWQQGF DGGIWSDWSK
201: PSDMHRHSSH VSPALSPQPL GSFGSYGHNI PMGSQRQRSF YGYGSGSNSY NRGYMHSGGH GQGSNYGSRL ISNVSMGNQS WIGVDNIRGR GRVSDPSSLG
301: GGYNGNFDIL NEQNRGPRAS KPKTQVSSEE LDSSADTKKH NKSSTKEHED SNNNSNDFVT DYNNAKLFII KSYSEDNVHK SIKYNVWAST ANGNKKLDAA
401: YREAKDEKEP CPVFLLFSVN ASSQFCGVAE MIGPVDFEKS VDYWQQDKWS GQFPVKWHII KDVPNSQFRH IILENNDNKP VTNSRDTQEV KLEQGIEMLK
501: IFKSYDAETS ILDDFEFYEE REKIIQDRKA RRQPSLPSGV VESGDKPSSA AALQTDLIKN MSKSFAQVVR LDEAAKTSSP PDATTTTVAV SQSN

Best Arabidopsis Sequence Match ( AT3G13060.2 )
(BLAST)

001: MATTQSHTSD LTSEEQPASL DIMKEQTVPA NNETSASFKS SQEAPVVVHP AKVAPLTGPY GLAGDFAGHL PSSILSPQAQ GFYYRGYENP TGEWDEYSSY
101: VNVEGLDITS PVGFNENASL VYQTGYGYNP QMPYGPYSPA ASPLPSEGQL YSPQQFPFSG ASPYYQQVVP PSMQYITSPT QPELTSLVGV DQQGDNIGPR
201: QSYHPHPIGP FNGNQPNLGF PEWQQGFDGG IWSDWSKPSD MHRHSSSISP ALSPQPLGSY GSYGQNIPMG SQRQRSFYGF GSGSNSYNRG YMHSGGRGQG
301: SNYGSRLISN VGMGNQGWIG VDNSRGRGRV SDPSLGGAYN GTFDILNEQN RGPRASKPKT QVLEELDSAA DSKKNNKGSA KEHEESNNAD FVTDYTNAKL
401: FIIKSYSEDN VHKSIKYNVW ASTPNGNKKL DAAYREAKDE KEPCPLFLLF SVNASSQFCG VAEMVGPVDF EKSVDYWQQD KWSGQFPVKW HIIKDVPNSQ
501: FRHIILENND NKPVTNSRDT QEVKLEQGIE MLKIFKNYDA DTSILDDFGF YEEREKIIQD RKARRQPSLP SAGVVAGENE HKPASAALPT DFMKNMSKSF
601: AQVVRLDEGS KEAVKASSSP DAITTAAVSS GQSN

Arabidopsis Description

ECT5Evolutionarily conserved C-terminal region 5 [Source:UniProtKB/TrEMBL;Acc:Q0WR25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.