Factsheet for Bra039366.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43378	Canola	nucleus	99.5	97.39
Bra034710.1-P	Field mustard	nucleus	84.03	85.02
AT3G13060.2	Thale cress	nucleus	88.52	83.91
Zm00001d002008_P001	Maize	cytosol	9.82	80.82
Os08t0556000-01	Rice	nucleus	48.25	46.47
KXG25412	Sorghum	cytosol	48.59	45.7
GSMUA_Achr4P12480_001	Banana	cytosol	43.43	44.92
TraesCS1A01G044500.1	Wheat	nucleus	47.42	44.39
HORVU1Hr1G008330.2	Barley	nucleus	47.42	44.39
GSMUA_Achr4P11560_001	Banana	nucleus	47.92	44.38
Zm00001d031981_P002	Maize	cytosol	47.75	44.09
TraesCS1D01G045100.1	Wheat	nucleus	46.92	43.93
TraesCS1B01G057800.3	Wheat	nucleus	46.92	43.93
TraesCS7A01G276800.3	Wheat	nucleus	44.43	42.72
TraesCS7D01G276800.4	Wheat	nucleus	44.26	42.56
EES14722	Sorghum	nucleus	41.93	42.42
TraesCS7B01G174500.1	Wheat	nucleus	41.93	42.07
Os08t0224200-01	Rice	mitochondrion	43.26	42.0
TraesCS7B01G182100.2	Wheat	cytosol	40.6	41.22
Zm00001d049360_P004	Maize	extracellular	40.77	41.11
TraesCS7A01G291700.1	Wheat	cytosol	40.27	41.02
Zm00001d024339_P001	Maize	extracellular	40.27	40.88
HORVU7Hr1G069070.2	Barley	cytosol	40.1	40.85
GSMUA_Achr1P10560_001	Banana	nucleus	29.95	40.45
Bra004105.1-P	Field mustard	nucleus	26.46	40.15
TraesCS7D01G285000.1	Wheat	endoplasmic reticulum	39.77	39.05
Bra006780.1-P	Field mustard	cytosol	32.78	38.7
Os04t0608800-01	Rice	nucleus	36.44	38.56
GSMUA_Achr4P04600_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	48.42	37.74
Bra008509.1-P	Field mustard	cytosol	26.46	37.59
Bra031960.1-P	Field mustard	nucleus	24.63	37.37
Zm00001d008913_P001	Maize	cytosol, nucleus, peroxisome	24.79	37.34
KXG27074	Sorghum	cytosol	34.11	37.14
Bra035104.1-P	Field mustard	cytosol	27.12	36.79
Bra036423.1-P	Field mustard	nucleus	24.79	36.7
Bra020382.1-P	Field mustard	nucleus	33.61	36.53
Zm00001d002372_P002	Maize	nucleus	32.78	35.69
Bra010911.1-P	Field mustard	nucleus	30.45	35.12
Bra008406.1-P	Field mustard	cytosol	26.12	35.04
HORVU7Hr1G058250.46	Barley	cytosol, plastid	27.62	35.02
Bra027432.1-P	Field mustard	nucleus	36.11	34.23
Bra018951.1-P	Field mustard	cytosol	14.48	33.59
Bra038524.1-P	Field mustard	cytosol	12.48	33.33
Bra014253.1-P	Field mustard	cytosol	16.14	32.55
Bra001506.1-P	Field mustard	nucleus	34.44	32.39
Bra039400.1-P	Field mustard	nucleus	34.11	32.23
Bra003615.1-P	Field mustard	nucleus	26.96	31.83
Zm00001d047072_P001	Maize	mitochondrion	24.96	30.67
Bra019988.1-P	Field mustard	nucleus	23.63	28.34
Bra018708.1-P	Field mustard	nucleus	28.12	27.8

Protein Annotations

EnsemblPlants:Bra039366.1	EnsemblPlants:Bra039366.1-P	EnsemblPlantsGene:Bra039366	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF24
PFAM:PF04146	PFscan:PS50882	SEG:seg	UniParc:UPI000253E8D6	UniProt:M4FE45	MapMan:16.5.2.1

Description

AT3G13060 (E=3e-153) ECT5 | ECT5; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: YT521-B-like protein (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: ECT2; protein binding (TAIR:AT3G13460.1); Has 1007 Blast hits to 965 proteins in 147 species: Archae - 0; Bacteria - 8; Metazoa - 528; Fungi - 103; Plants - 235; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).

Coordinates

chrScaffold000164:+:145120..147434

Molecular Weight (calculated)

66576.6 Da

IEP (calculated)

5.021

GRAVY (calculated)

-0.786

Length

601 amino acids

Sequence
(BLAST)

001: MSTEEQPVNL DIMKEQSVAA NNETSASFNK SSQEPAVVVH PAKVAPLSAP YGLSGDFAGH LPSSILSPQA QGFYYRGYET PTGEWDEYSS YVNVEGLDIN
101: SPVGFNENAS MVYQTGYGYN PQMPYGPYSP AATPLPSEAQ LYSPQQFPFS GASPYYQQVV PPSMQYISSP TQPELTSLVA VDQQGDNMTR PSYQPHPIGP
201: FNGNQTNLGF PEWQQGFDGG IWSDWSKPSD MHRHSSSFSP ALSPQPLGSF GSYGHNIPMG SQRQRPFYGR GQGSNYGSRL NSYVGMGNQS WIGVDSTRGR
301: GRVTDPSLGG GYNGNYDILN EQNRGPRALK PKTQVSEELD SSADSKKHNK DSPKEESNNN NNPEFVTDYS EAKLFIIKSY SEDNVHKSIK YNVWASTPNG
401: NKKLDAAYRE AKEEKEACPV FLLFSVNASS QFCGVAEMIG PVDFEKSVDY WQQDKWNGQF PVKWHIIKDV PNSQFRHIIL ENNDNKPVTN SRDTQEVKLE
501: QGIEMLKIFK NYDAETSILD DFGFYEEREK IIQERKARRQ PNLPSAGGGE NEHKPASAAL QTEFIKNMSK SFAQVVRLDE GSKASPDATT TTVAVSSGQS
601: N

Best Arabidopsis Sequence Match ( AT3G13060.4 )
(BLAST)

001: MNTEEQPASL DIMKEQTVPA NNETSASFKS SQEAPVVVHP AKVAPLTGPY GLAGDFAGHL PSSILSPQAQ GFYYRGYENP TGEWDEYSSY VNVEGLDITS
101: PVGFNENASL VYQTGYGYNP QMPYGPYSPA ASPLPSEGQL YSPQQFPFSG ASPYYQQVVP PSMQYITSPT QPELTSLVGV DQQGDNIGPR QSYHPHPIGP
201: FNGNQPNLGF PEWQQGFDGG IWSDWSKPSD MHRHSSSISP ALSPQPLGSY GSYGQNIPMG SQRQRSFYGF GSGSNSYNRG YMHSGGRGQG SNYGSRLISN
301: VGMGNQGWIG VDNSRGRGRV SDPSLGGAYN GTFDILNEQN RGPRASKPKT QVLEELDSAA DSKKNNKGSA KEHEESNNAD FVTDYTNAKL FIIKSYSEDN
401: VHKSIKYNVW ASTPNGNKKL DAAYREAKDE KEPCPLFLLF SVNASSQFCG VAEMVGPVDF EKSVDYWQQD KWSGQFPVKW HIIKDVPNSQ FRHIILENND
501: NKPVTNSRDT QEVKLEQGIE MLKIFKNYDA DTSILDDFGF YEEREKIIQD RKARRQPSLP SAGVVAGENE HKPASAALPT DFMKNMSKSF AQVVRLDEGS
601: KEAVKASSSP DAITTAAVSS GQSN

Arabidopsis Description

ECT5Evolutionarily conserved C-terminal region 5 [Source:UniProtKB/TrEMBL;Acc:Q0WR25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.