Factsheet for TraesCS1D01G045100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G044500.1	Wheat	nucleus	96.88	96.88
TraesCS1B01G057800.3	Wheat	nucleus	95.79	95.79
HORVU1Hr1G008330.2	Barley	nucleus	95.17	95.17
TraesCS7D01G276800.4	Wheat	nucleus	83.18	85.44
Os08t0556000-01	Rice	nucleus	80.69	83.01
KXG25412	Sorghum	cytosol	75.7	76.06
Zm00001d031981_P002	Maize	cytosol	71.5	70.51
CDY51902	Canola	cytosol	13.08	54.19
GSMUA_Achr4P12480_001	Banana	cytosol	48.13	53.18
GSMUA_Achr4P11560_001	Banana	nucleus	50.31	49.77
Bra034710.1-P	Field mustard	nucleus	45.48	49.16
VIT_09s0054g01600.t01	Wine grape	nucleus	50.62	48.8
AT3G13060.2	Thale cress	nucleus	47.66	48.27
CDY44025	Canola	nucleus	46.26	47.75
CDY23562	Canola	nucleus	46.11	47.74
Bra039366.1-P	Field mustard	nucleus	43.93	46.92
CDY24224	Canola	nucleus	44.24	46.25
CDY43378	Canola	nucleus	44.24	46.25
KRH46969	Soybean	endoplasmic reticulum, extracellular	46.42	46.06
VIT_01s0010g03690.t01	Wine grape	cytosol	40.5	45.45
KRH44697	Soybean	mitochondrion	46.42	45.29
TraesCS7D01G285000.1	Wheat	endoplasmic reticulum	41.28	43.3
GSMUA_Achr4P04600_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	51.71	43.06
Bra006780.1-P	Field mustard	cytosol	31.0	39.1
CDY58572	Canola	nucleus	30.37	38.46
CDX88661	Canola	nucleus	30.53	38.43
AT5G58190.2	Thale cress	nucleus	31.0	37.69
CDY02802	Canola	nucleus	31.15	37.45
CDY32718	Canola	nucleus	30.53	37.05
Solyc05g032850.2.1	Tomato	nucleus	34.74	36.92
Bra020382.1-P	Field mustard	nucleus	30.69	35.62
VIT_11s0065g00160.t01	Wine grape	nucleus	39.25	34.29
CDY67303	Canola	nucleus	27.26	33.59
CDX90116	Canola	nucleus	27.26	33.59
Bra010911.1-P	Field mustard	nucleus	27.1	33.4
CDY11758	Canola	nucleus, plastid	27.88	32.31
TraesCS5D01G439100.1	Wheat	nucleus	29.28	31.97
AT1G27960.1	Thale cress	cytosol	26.64	31.73
TraesCS5D01G396400.3	Wheat	nucleus	32.4	31.42
TraesCS4D01G273200.4	Wheat	cytosol	32.71	29.05
TraesCS5D01G439200.1	Wheat	cytosol	28.97	28.97
TraesCS3D01G267900.1	Wheat	nucleus	30.69	28.63
TraesCS4D01G180500.5	Wheat	cytosol, nucleus, plastid	27.73	24.96
TraesCS2D01G012200.1	Wheat	cytosol	26.95	24.37
TraesCS3D01G199400.2	Wheat	cytosol	22.27	20.78
TraesCS1D01G109300.1	Wheat	cytosol	21.5	19.55

Protein Annotations

EnsemblPlants:TraesCS1D01G045100.1	EnsemblPlantsGene:TraesCS1D01G045100	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF57	PFAM:PF04146
PFscan:PS50882	SEG:seg	MapMan:16.5.2.1	:	:	:

Description

No Description!

Coordinates

chr1D:+:24533426..24539102

Molecular Weight (calculated)

70524.0 Da

IEP (calculated)

5.214

GRAVY (calculated)

-0.685

Length

642 amino acids

Sequence
(BLAST)

001: MESARAGSER AGTMDSPEPR IEVEQKPVLA SNTKEQTIPV KDEKTVKPTI SLDSSVINLP SDVQAQAGTS NIGGEHNVLY PQHMYSSQAQ PFYYQGPGYE
101: NPPNEWDVYP PYAEGLEAGP AVVYNEDPSM MYHGGYGYDP YAHYSPISTP VPAGVSGDGQ LYSPQQFSFS APYYQQPVQP GMPYLSSPTP ISQGETMMPI
201: DPTQGAFMAD TLSPNSFLFG PRPEWFRSSE GTGSFPSPAA SPQPFGGVSG PFGQSNFPMA SGMMSPQQKS FFGFGTPGDS YGRGFSHSGG FPQATNYGGP
301: FPGYGMNGRS FIPIDKGRRR GRGNSLLCSC DGPLDFLNEQ SRGPRATRPK KQPEDDSKDE KPSVGLDQEP YNRADFVTEY KNARFFIIKS YSEDNVHKSI
401: KYGVWASTTN GNKKLDAAYH EVKDKEEHCP IFLLFSVNAS AQFCGVAEMT GPVNFEKSVD YWQQDKWTGQ FPVKWHIVKD VPNNLFRHII LENNENKPVT
501: NSRDTQEVKL EQGLEMLKIF KDHEDDVSIL DDFDFYEERE KALLENKARL HQQQQISSSC VADPKRPSTV PTDLVGHGTK TPSVVEPKKP STVPTDVVGH
601: ITKTFAQAVR LGEAKSVSPS GEKVLGGDSS AAAKPVEVKE SS

Best Arabidopsis Sequence Match ( AT3G13060.2 )
(BLAST)

001: MATTQSHTSD LTSEEQPASL DIMKEQTVPA NNETSASFKS SQEAPVVVHP AKVAPLTGPY GLAGDFAGHL PSSILSPQAQ GFYYRGYENP TGEWDEYSSY
101: VNVEGLDITS PVGFNENASL VYQTGYGYNP QMPYGPYSPA ASPLPSEGQL YSPQQFPFSG ASPYYQQVVP PSMQYITSPT QPELTSLVGV DQQGDNIGPR
201: QSYHPHPIGP FNGNQPNLGF PEWQQGFDGG IWSDWSKPSD MHRHSSSISP ALSPQPLGSY GSYGQNIPMG SQRQRSFYGF GSGSNSYNRG YMHSGGRGQG
301: SNYGSRLISN VGMGNQGWIG VDNSRGRGRV SDPSLGGAYN GTFDILNEQN RGPRASKPKT QVLEELDSAA DSKKNNKGSA KEHEESNNAD FVTDYTNAKL
401: FIIKSYSEDN VHKSIKYNVW ASTPNGNKKL DAAYREAKDE KEPCPLFLLF SVNASSQFCG VAEMVGPVDF EKSVDYWQQD KWSGQFPVKW HIIKDVPNSQ
501: FRHIILENND NKPVTNSRDT QEVKLEQGIE MLKIFKNYDA DTSILDDFGF YEEREKIIQD RKARRQPSLP SAGVVAGENE HKPASAALPT DFMKNMSKSF
601: AQVVRLDEGS KEAVKASSSP DAITTAAVSS GQSN

Arabidopsis Description

ECT5Evolutionarily conserved C-terminal region 5 [Source:UniProtKB/TrEMBL;Acc:Q0WR25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.