Factsheet for TraesCS4D01G180500.5

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G179100.3	Wheat	cytosol, nucleus, plastid	97.48	97.34
TraesCS4A01G125600.3	Wheat	cytosol, nucleus, plastid	97.48	96.66
HORVU4Hr1G052390.3	Barley	golgi	87.66	83.33
Os03t0317000-01	Rice	plasma membrane	64.66	65.02
KRH36908	Soybean	cytosol	25.81	41.44
AT3G17330.1	Thale cress	nucleus	28.33	33.95
KRH50636	Soybean	cytosol	31.7	32.52
CDX93645	Canola	nucleus	27.91	32.52
CDY43306	Canola	cytosol	27.91	32.46
KRH02430	Soybean	cytosol	31.42	32.28
Bra018708.1-P	Field mustard	nucleus	27.49	32.24
VIT_05s0020g00460.t01	Wine grape	cytosol	31.42	31.37
Solyc12g099090.1.1	Tomato	cytosol	30.15	31.16
AT1G48110.2	Thale cress	nucleus	27.91	31.14
PGSC0003DMT400011739	Potato	cytosol	30.43	31.04
KRH11876	Soybean	endoplasmic reticulum	29.45	29.96
TraesCS5D01G439100.1	Wheat	nucleus	23.98	29.08
GSMUA_Achr1P24980_001	Banana	nucleus	33.66	28.92
TraesCS5D01G396400.3	Wheat	nucleus	26.23	28.25
GSMUA_Achr8P29890_001	Banana	cytosol	32.12	28.24
TraesCS5D01G439200.1	Wheat	cytosol	25.39	28.19
TraesCS7D01G276800.4	Wheat	nucleus	24.4	27.84
TraesCS1D01G045100.1	Wheat	nucleus	24.96	27.73
TraesCS3D01G267900.1	Wheat	nucleus	26.51	27.47
TraesCS7D01G285000.1	Wheat	endoplasmic reticulum	23.56	27.45
TraesCS4D01G273200.4	Wheat	cytosol	25.95	25.59
TraesCS3D01G199400.2	Wheat	cytosol	22.72	23.55
TraesCS2D01G012200.1	Wheat	cytosol	19.5	19.58
TraesCS1D01G109300.1	Wheat	cytosol	18.93	19.12

Protein Annotations

EnsemblPlants:TraesCS4D01G180500.5	EnsemblPlantsGene:TraesCS4D01G180500	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF60	PFAM:PF04146
PFscan:PS50882	SEG:seg	MapMan:16.5.2.1	:	:	:

Description

No Description!

Coordinates

chr4D:-:314402000..314405546

Molecular Weight (calculated)

76873.2 Da

IEP (calculated)

6.210

GRAVY (calculated)

-0.569

Length

713 amino acids

Sequence
(BLAST)

001: MSGFGTNSAM GSSSLPSRVV YNTGNDLPVE YIYDQGLSYP ATNGYAYYGG FEPPVGWSEN TNYWGVDGQY LQLTNDNLPY VYCTPGYEFS YSSQDQYTSY
101: MPGMFMGVDG SVVGSQQYFT NPYQPPGSPS GYFPVYLQPT TDLSSAVSLE PPVFSTGTSV ASWPANTSIK DTHQMSGNTM ASRTVPSASP AIGSSHRAYQ
201: NQSTNKPSDL PGANVARHDK PSTSHLTVLV DTDKKFQAAS GMGSSGDNGQ ITDRAEVAPV AAMVGEGAQS KAVSSSAVKN IVIHPDQYNK ADFPCDHPDA
301: KFFVIKSYSE DDVHKSIKYN VWSSTPNGNR RLDAAYSEAK GSQRKCPIFL FFSVNTSGQF CGVAEMVGPV DFHKDMDFWQ QDKWSGSFPL KWHLVKDVPN
401: STFRHIILEN NENKPVTNSR DTQEIPYKSG INMLKLFKSS PMTTSILDDF PFYEGRQKAM LEQKRRSLGR SFGGLTYVPA LVAKRSVVVE GEPSEVGEGI
501: SSKDPHPGKT GQDSGACEQP DKTSQTKDGV VTQVLKKDAV SPVEQPEHVK TERHSLDDIH QQNEGCSVSV SPENAGREHA GLSELVKSNG KVYSDRESQP
601: VISSTEPNSS GRKGLSQELG GHDPSDRTKG GASGIMKDVK ATLLKKLEGL STSHTDGQAK GIVNEAPAGV VKVGSVHIKL NVAGGSSSEI IGDGSLELKG
701: AEHIEQGIST KLS

Best Arabidopsis Sequence Match ( AT3G17330.1 )
(BLAST)

001: MYTEGASDFV IDQSMYYPAY YSSGYDSSVG LQGGQNENAP YICYTPSYGY AQSPYNPYNP YIPGASIGVD SSFVGFQQYY SDPPYESAAS SPTYVPYVIQ
101: PDMVSNSSTD SLVANGGQSD GRGSMQRNGS AIAGLPKDAP KSTTTGQYKQ PGIPKNVSTT ASAHSLQGKT AYANTLLPYG KSDIANGVSS IASYSYKPCS
201: KIYDARGDNN TTGSTYTSEQ NRGSRTRRSR NQLIVKAYTT KAGNADAEGN IVINPDRYNK EDFSIEYSDA RFFVIKSYSE DDVHKSIKYG VWSSTLNGNK
301: KLQSVYEDAQ RIATEKSREC PIFLFFSVNS SGLFCGVAEM TGPVSFDRDM DFWQQDKWSG SFPVKWHIIK DVPNSYFRHI ILHNNENKPV TNSRDTQEII
401: LKQGLEVLKL FKHHAEKTSL LDDFMYYEDR QRLMQEERAR LPFRTFRRPF PVLNLDFSDR SKKSSKDVVK KPSVTSAETK VVQLKNSDGD EKSNTQEATD
501: DSTPSTLKFG SLAIKPTAGT TFNPTQPKPK PTPSLGSDHK SDSSEEVTGS LADDIVSVGS LPIKVKGSKE LSSKIAAVGT SPLSTQDQFR SKPGF

Arabidopsis Description

ECT6At3g17330 [Source:UniProtKB/TrEMBL;Acc:Q1JPL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.