Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G431100.1 | Wheat | cytosol | 97.04 | 97.04 |
| TraesCS5B01G432900.2 | Wheat | extracellular | 95.33 | 94.44 |
| HORVU5Hr1G104390.3 | Barley | plastid | 91.59 | 85.47 |
| EER93313 | Sorghum | cytosol | 58.72 | 65.91 |
| TraesCS5D01G439100.1 | Wheat | nucleus | 57.63 | 62.93 |
| Os07t0170300-01 | Rice | plasma membrane | 51.87 | 55.32 |
| CDY57677 | Canola | mitochondrion | 14.02 | 52.63 |
| Zm00001d007890_P002 | Maize | mitochondrion | 47.66 | 46.86 |
| Bra004105.1-P | Field mustard | nucleus | 28.35 | 45.96 |
| CDY07437 | Canola | nucleus | 29.91 | 45.61 |
| Zm00001d018896_P002 | Maize | mitochondrion | 50.0 | 45.47 |
| CDY39299 | Canola | nucleus | 29.59 | 44.92 |
| Bra008509.1-P | Field mustard | cytosol | 28.82 | 43.74 |
| CDY50448 | Canola | cytosol | 17.29 | 43.53 |
| CDY56132 | Canola | nucleus | 30.22 | 43.4 |
| CDY52966 | Canola | cytosol | 29.91 | 42.86 |
| CDX91541 | Canola | mitochondrion | 10.44 | 41.1 |
| Bra036423.1-P | Field mustard | nucleus | 25.7 | 40.64 |
| CDY21154 | Canola | nucleus | 25.7 | 40.54 |
| AT3G03950.3 | Thale cress | cytosol | 26.95 | 40.42 |
| AT5G61020.1 | Thale cress | cytosol | 31.15 | 40.4 |
| CDY69959 | Canola | nucleus | 25.08 | 40.35 |
| CDY29972 | Canola | nucleus | 25.7 | 40.24 |
| Bra031960.1-P | Field mustard | nucleus | 24.61 | 39.9 |
| CDY42891 | Canola | nucleus | 24.61 | 39.5 |
| CDY50867 | Canola | nucleus | 24.61 | 39.5 |
| AT1G55500.5 | Thale cress | cytosol | 36.14 | 38.35 |
| VIT_06s0004g00200.t01 | Wine grape | nucleus | 41.43 | 37.73 |
| TraesCS5D01G396400.3 | Wheat | nucleus | 38.63 | 37.46 |
| VIT_08s0007g07450.t01 | Wine grape | cytosol | 40.03 | 37.03 |
| CDY23602 | Canola | nucleus | 35.98 | 37.02 |
| CDX82538 | Canola | nucleus | 36.76 | 36.88 |
| CDX75712 | Canola | nucleus | 36.29 | 36.75 |
| CDY43989 | Canola | nucleus | 36.29 | 36.75 |
| KRH59123 | Soybean | nucleus | 40.5 | 36.72 |
| KRH43005 | Soybean | nucleus | 40.34 | 36.63 |
| Bra027432.1-P | Field mustard | nucleus | 36.14 | 36.59 |
| AT3G13460.1 | Thale cress | cytosol | 37.85 | 36.43 |
| CDY24182 | Canola | nucleus | 30.69 | 36.41 |
| Bra001506.1-P | Field mustard | nucleus | 36.14 | 36.31 |
| Solyc01g028860.2.1 | Tomato | nucleus | 39.72 | 36.12 |
| Bra018951.1-P | Field mustard | cytosol | 14.49 | 35.91 |
| Bra039400.1-P | Field mustard | nucleus | 35.36 | 35.69 |
| CDY07089 | Canola | nucleus | 35.36 | 35.69 |
| Bra014253.1-P | Field mustard | cytosol | 16.51 | 35.57 |
| Bra038524.1-P | Field mustard | cytosol | 12.31 | 35.11 |
| PGSC0003DMT400061684 | Potato | endoplasmic reticulum, plasma membrane | 39.41 | 34.38 |
| KRG94807 | Soybean | nucleus | 35.05 | 34.14 |
| TraesCS4D01G273200.4 | Wheat | cytosol | 38.16 | 33.89 |
| KRH70155 | Soybean | nucleus | 32.87 | 33.49 |
| KRH06717 | Soybean | nucleus | 33.96 | 32.88 |
| TraesCS1D01G045100.1 | Wheat | nucleus | 28.97 | 28.97 |
| TraesCS7D01G276800.4 | Wheat | nucleus | 28.04 | 28.8 |
| TraesCS7D01G285000.1 | Wheat | endoplasmic reticulum | 27.41 | 28.76 |
| TraesCS3D01G267900.1 | Wheat | nucleus | 27.26 | 25.44 |
| TraesCS4D01G180500.5 | Wheat | cytosol, nucleus, plastid | 28.19 | 25.39 |
| TraesCS2D01G012200.1 | Wheat | cytosol | 25.23 | 22.82 |
| TraesCS3D01G199400.2 | Wheat | cytosol | 23.21 | 21.66 |
| TraesCS1D01G109300.1 | Wheat | cytosol | 19.0 | 17.28 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G439200.1 | EnsemblPlantsGene:TraesCS5D01G439200 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF34 | PFAM:PF04146 |
| PFscan:PS50882 | SEG:seg | MapMan:16.5.2.1 | : | : | : |
Description
No Description!
Coordinates
chr5D:+:492726534..492730487
Molecular Weight (calculated)
69507.8 Da
IEP (calculated)
8.703
GRAVY (calculated)
-0.690
Length
642 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPAAAHAAD HAADLLHTLS LDPKGVAGQG KDAQRKVSAA PNGRLNGVVA SPNPQVASAG QWPAMGQQDY KNANMYGAGA DAYQYYYGGW GDYSVYVGLD
101: GAESLNPGAY GDMYCYPQYG VASSGYDAQM YGSQHYQYPS TYLQPQTAST TKPAYKPNAG KSDPLPQKDA SAAPAAYQKP GLVDASKANS NSTDSSTGLK
201: KTTYPVKPSG RSASYQNHGD KAAYPSYGGH TQQKLPVGNT TSTASNPKTK GLLGQNSAMG PQTPGYMSSM YSSVMYNANA YAPDYWYGSH LYGSGMYGGW
301: NVLSDGKYKP RPKTYGSYRF GNENIDGLNE LKRGPRSTVI KNEQGAGEAA VAPAKGQELS TGDASNAVVQ DQYNKADFVE TYSDAKFFVI KSYSEDDVHK
401: SIKYNVWAST PSGNKRLDAA YQAAKDKSSN SPVFLLFSVN TSGQFIGLAE MVGQVDFNKT VEYWQQDKWT GCFPVKWHIV KDIPNTLLKH IILEYNENKP
501: VTNSRDTQEV RLEQGLQVLK IFKDHVCKTS MLDDFGFYDN REKIMQEKKS KRQQPLEKIM NKKPLSIKNT ENQDVDGKQG IMNKKPLSTS NTENQDVDAK
601: QGLQELKVLG EKNPVVENGV AAGAVNGVAP TDASPAAVAV GC
101: GAESLNPGAY GDMYCYPQYG VASSGYDAQM YGSQHYQYPS TYLQPQTAST TKPAYKPNAG KSDPLPQKDA SAAPAAYQKP GLVDASKANS NSTDSSTGLK
201: KTTYPVKPSG RSASYQNHGD KAAYPSYGGH TQQKLPVGNT TSTASNPKTK GLLGQNSAMG PQTPGYMSSM YSSVMYNANA YAPDYWYGSH LYGSGMYGGW
301: NVLSDGKYKP RPKTYGSYRF GNENIDGLNE LKRGPRSTVI KNEQGAGEAA VAPAKGQELS TGDASNAVVQ DQYNKADFVE TYSDAKFFVI KSYSEDDVHK
401: SIKYNVWAST PSGNKRLDAA YQAAKDKSSN SPVFLLFSVN TSGQFIGLAE MVGQVDFNKT VEYWQQDKWT GCFPVKWHIV KDIPNTLLKH IILEYNENKP
501: VTNSRDTQEV RLEQGLQVLK IFKDHVCKTS MLDDFGFYDN REKIMQEKKS KRQQPLEKIM NKKPLSIKNT ENQDVDGKQG IMNKKPLSTS NTENQDVDAK
601: QGLQELKVLG EKNPVVENGV AAGAVNGVAP TDASPAAVAV GC
001: MSTVAPPADQ AADVLKKLSL DSKSRTLEIP EPTKKTGVYQ YGAMDSNGQV PSFDRSLSPM LPSDALDPSV FYVPNVYQQP YYYGYGSDYT GYTNSESVDM
101: TSGAYGENAS LVYPQGYGYA AFPYSPATSP APQLGGDGQL YGAQQYQYPF PLTASSGPFA SSVPASTQSK LSTNKAANSA SAGIPKGMNG SAPVKPLNQS
201: ALYGNSALGG GLAAGYQDPR YSYDGFYTPV SWHDGSNFSD VQRSVSGSGV ASSYSKANNN VPATRNQNSS SNSHYTSMYQ PASMTGYAAQ GYYDRVSPNK
301: SYGQYGSTVR SGMGYGSSGY GSRTNERGWL NTDNKYRSRG RGNSYFYGNE NIDGLNELNR GPRAKGTKAT EEVSSEEVKK QTFDESNTEE TVTCVLPDRE
401: ECNRDDFPVE YKDAKFFIIK SYSEDDVHKS IKYNVWASTP NGNKKLDAAY QEAQQKSSGC PVFLFFSVNA SGQFIGLAEM KGPVDFNKNI EYWQQDKWTG
501: SFPLKWHILK DVPNSLLKHI TLEYNENKPV TNSRDTQEVK LEQGLKVVKI FKEHNSKTCI LDDFSFYEAR QKTILEKKAK QQQSQKQARE ENGLGRKNQ
101: TSGAYGENAS LVYPQGYGYA AFPYSPATSP APQLGGDGQL YGAQQYQYPF PLTASSGPFA SSVPASTQSK LSTNKAANSA SAGIPKGMNG SAPVKPLNQS
201: ALYGNSALGG GLAAGYQDPR YSYDGFYTPV SWHDGSNFSD VQRSVSGSGV ASSYSKANNN VPATRNQNSS SNSHYTSMYQ PASMTGYAAQ GYYDRVSPNK
301: SYGQYGSTVR SGMGYGSSGY GSRTNERGWL NTDNKYRSRG RGNSYFYGNE NIDGLNELNR GPRAKGTKAT EEVSSEEVKK QTFDESNTEE TVTCVLPDRE
401: ECNRDDFPVE YKDAKFFIIK SYSEDDVHKS IKYNVWASTP NGNKKLDAAY QEAQQKSSGC PVFLFFSVNA SGQFIGLAEM KGPVDFNKNI EYWQQDKWTG
501: SFPLKWHILK DVPNSLLKHI TLEYNENKPV TNSRDTQEVK LEQGLKVVKI FKEHNSKTCI LDDFSFYEAR QKTILEKKAK QQQSQKQARE ENGLGRKNQ
Arabidopsis Description
ECT4evolutionarily conserved C-terminal region 4 [Source:TAIR;Acc:AT1G55500]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.