Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004105.1-P | Field mustard | nucleus | 91.25 | 97.47 |
| CDY07437 | Canola | nucleus | 96.45 | 96.91 |
| CDY50448 | Canola | cytosol | 45.15 | 74.9 |
| CDY57677 | Canola | mitochondrion | 30.02 | 74.27 |
| CDX91541 | Canola | mitochondrion | 28.37 | 73.62 |
| CDY56132 | Canola | nucleus | 77.07 | 72.93 |
| CDY52966 | Canola | cytosol | 76.6 | 72.32 |
| AT5G61020.1 | Thale cress | cytosol | 65.25 | 55.76 |
| CDY51902 | Canola | cytosol | 17.26 | 47.1 |
| CDY69959 | Canola | nucleus | 39.95 | 42.36 |
| CDY21154 | Canola | nucleus | 40.43 | 42.01 |
| CDY50867 | Canola | nucleus | 39.48 | 41.75 |
| CDY42891 | Canola | nucleus | 39.48 | 41.75 |
| CDY29972 | Canola | nucleus | 40.43 | 41.71 |
| CDY05744 | Canola | cytosol | 10.64 | 35.71 |
| GSMUA_Achr4P14820_001 | Banana | cytosol | 27.42 | 35.05 |
| CDX82538 | Canola | nucleus | 49.65 | 32.81 |
| CDY23602 | Canola | nucleus | 48.23 | 32.69 |
| CDX75712 | Canola | nucleus | 48.94 | 32.65 |
| CDY43989 | Canola | nucleus | 48.46 | 32.33 |
| CDY24182 | Canola | nucleus | 41.13 | 32.16 |
| CDY07089 | Canola | nucleus | 48.23 | 32.08 |
| EER93313 | Sorghum | cytosol | 43.03 | 31.82 |
| GSMUA_Achr7P01490_001 | Banana | nucleus | 42.08 | 31.79 |
| VIT_08s0007g07450.t01 | Wine grape | cytosol | 51.54 | 31.41 |
| TraesCS5A01G431200.1 | Wheat | nucleus | 43.5 | 31.24 |
| TraesCS5D01G439100.1 | Wheat | nucleus | 42.55 | 30.61 |
| KRH70155 | Soybean | nucleus | 45.15 | 30.32 |
| GSMUA_Achr4P22630_001 | Banana | nucleus | 43.97 | 29.95 |
| TraesCS5B01G433000.1 | Wheat | cytosol | 42.08 | 29.87 |
| CDX88524 | Canola | cytosol | 30.97 | 29.64 |
| TraesCS5A01G431100.1 | Wheat | cytosol | 44.92 | 29.59 |
| TraesCS5D01G439200.1 | Wheat | cytosol | 44.92 | 29.59 |
| CDX87395 | Canola | cytosol | 30.97 | 29.5 |
| GSMUA_Achr4P21380_001 | Banana | nucleus | 45.86 | 29.48 |
| CDY22270 | Canola | cytosol | 31.21 | 29.46 |
| EER93461 | Sorghum | nucleus | 45.86 | 29.44 |
| CDY56809 | Canola | cytosol | 30.97 | 29.24 |
| Os07t0170300-01 | Rice | plasma membrane | 41.61 | 29.24 |
| GSMUA_Achr5P02830_001 | Banana | cytosol | 42.55 | 29.22 |
| TraesCS5B01G432900.2 | Wheat | extracellular | 44.68 | 29.17 |
| GSMUA_Achr4P28430_001 | Banana | nucleus, plastid | 42.32 | 29.11 |
| TraesCS5A01G386600.2 | Wheat | nucleus | 45.39 | 28.96 |
| Zm00001d034005_P003 | Maize | plasma membrane | 45.15 | 28.94 |
| TraesCS5B01G391500.1 | Wheat | nucleus | 45.15 | 28.85 |
| KRG94807 | Soybean | nucleus | 44.92 | 28.83 |
| Os03t0748000-01 | Rice | plasma membrane | 44.92 | 28.74 |
| TraesCS5D01G396400.3 | Wheat | nucleus | 44.92 | 28.7 |
| KRH06717 | Soybean | nucleus | 44.92 | 28.66 |
| KXG34475 | Sorghum | cytosol | 43.74 | 28.64 |
| HORVU5Hr1G094950.6 | Barley | cytosol, nucleus | 44.92 | 28.57 |
| GSMUA_Achr7P27220_001 | Banana | cytosol | 43.97 | 28.14 |
| HORVU5Hr1G104380.1 | Barley | plastid | 43.5 | 27.84 |
| Os03t0158500-01 | Rice | nucleus | 46.34 | 27.72 |
| CDX79309 | Canola | nucleus | 33.1 | 27.5 |
| CDX68000 | Canola | nucleus | 33.1 | 27.5 |
| KXG40139 | Sorghum | plastid | 45.86 | 27.29 |
| CDY24224 | Canola | nucleus | 39.24 | 27.04 |
| CDY44025 | Canola | nucleus | 39.72 | 27.01 |
| CDX94944 | Canola | nucleus | 31.68 | 26.96 |
| Zm00001d007890_P002 | Maize | mitochondrion | 41.61 | 26.95 |
| CDY43378 | Canola | nucleus | 39.01 | 26.87 |
| CDY23562 | Canola | nucleus | 39.24 | 26.77 |
| HORVU5Hr1G104390.3 | Barley | plastid | 43.5 | 26.74 |
| CDY67303 | Canola | nucleus | 32.62 | 26.49 |
| CDX90116 | Canola | nucleus | 32.62 | 26.49 |
| CDX93476 | Canola | nucleus | 30.97 | 26.2 |
| CDX88661 | Canola | nucleus | 31.44 | 26.08 |
| CDY58572 | Canola | nucleus | 31.21 | 26.04 |
| CDY02802 | Canola | nucleus | 32.62 | 25.84 |
| Zm00001d048424_P003 | Maize | plastid | 45.15 | 25.81 |
| CDY32718 | Canola | nucleus | 32.15 | 25.71 |
| Zm00001d018896_P002 | Maize | mitochondrion | 42.55 | 25.5 |
| HORVU4Hr1G072940.4 | Barley | cytosol | 43.97 | 25.07 |
| CDY11758 | Canola | nucleus, plastid | 32.62 | 24.91 |
| TraesCS4D01G273200.4 | Wheat | cytosol | 42.55 | 24.9 |
| TraesCS4A01G031600.2 | Wheat | cytosol | 42.55 | 24.69 |
| TraesCS4B01G274500.2 | Wheat | plastid | 44.21 | 24.38 |
| Zm00001d027731_P012 | Maize | plastid | 45.39 | 23.91 |
| CDY60520 | Canola | cytosol | 7.09 | 22.73 |
| CDY43306 | Canola | cytosol | 31.68 | 21.86 |
| CDX93645 | Canola | nucleus | 31.44 | 21.73 |
Protein Annotations
| EnsemblPlants:CDY39299 | EnsemblPlantsGene:GSBRNA2T00067548001 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF56 | PFAM:PF04146 |
| PFscan:PS50882 | ProteinID:CDY39299 | ProteinID:CDY39299.1 | SEG:seg | UniParc:UPI0004EE38E6 | UniProt:A0A078HPG6 |
| MapMan:16.5.2.1 | : | : | : | : | : |
Description
BnaC06g26920DBnaC06g26920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPG6]
Coordinates
chrLK032444:-:310894..313041
Molecular Weight (calculated)
47866.4 Da
IEP (calculated)
7.464
GRAVY (calculated)
-0.890
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSISPSDQ AADLLQNLSI DQETMAKVTD NTGNNKQDVY GGNSNNGFST KKKLGYNNYS AQKGSYGSYY YPQAYQYPRY GYDMTYASGK TTNNTPYLGR
101: SGMDSMYSMY GPYSYMSGYG YDTYGYGTYK YTPNWYAFNN GYKTKGYGLY GKENAEWLNE LNRGPRAKGF KTGQPETVKA APPEDVSLPD SKEYNKEDFS
201: DSYYSNAKLF VIKSYSEDDV HKSIKYNVWS STPNGNKKLN AAYNEAKDKS CPVFLIFSVN TSGQFVGLAE MVGPVDFNQT VEYWQQDKWV GCFPVKWHIV
301: KDIPNSSLRH ITLENNENKP VTNSRDTQEV KVEQGVKVIK IFKEHESKTC ILDDFVFYES REKIIKEGKK KHQEYKKQQA LAASDKKATP KDEPKETKET
401: SSMIPEVVEE ISQNGVAEVA SAC
101: SGMDSMYSMY GPYSYMSGYG YDTYGYGTYK YTPNWYAFNN GYKTKGYGLY GKENAEWLNE LNRGPRAKGF KTGQPETVKA APPEDVSLPD SKEYNKEDFS
201: DSYYSNAKLF VIKSYSEDDV HKSIKYNVWS STPNGNKKLN AAYNEAKDKS CPVFLIFSVN TSGQFVGLAE MVGPVDFNQT VEYWQQDKWV GCFPVKWHIV
301: KDIPNSSLRH ITLENNENKP VTNSRDTQEV KVEQGVKVIK IFKEHESKTC ILDDFVFYES REKIIKEGKK KHQEYKKQQA LAASDKKATP KDEPKETKET
401: SSMIPEVVEE ISQNGVAEVA SAC
001: MANPDHVSDV LHNLSIDPTT KALAPDSETK LQGAYGGNGN DFLLNDELVE ATKIGKPSLL SKDGGVTKDK GSNLKKLGYQ SAAYNAKGSY GKGAYAYGYY
101: PPAYQYPRHG YTGSYASGKT NLQYQYLTQQ GRSAGNGQSY GGYMDNIYSN YGMCGPYTNG YGYGSYGYDS WKYMPNWYAV NNTYKPRNGY HGYGKENIEG
201: LNEMNRGPRA KGFNSQDGSK VMAVSLKEQR VTETEKLSED VSLLDPKDYN KIDFPETYTE AKFYVIKSYS EDDIHKSIKY SVWSSTPNGN KKLDASYNEA
301: KQKSDGCPVF LLFSVNTSGQ FVGLAEMVGP VDFNKTVEYW QQDKWIGCFP VKWHFVKDIP NSSLRHITLE NNENKPVTNS RDTQEVKLEQ GIKVIKIFKD
401: HASKTCILDD FEFYENRQKI IQERKSKHLQ IKKQTLVANA DKGVMSKINL VKPQESTTAS EDAAALGVAA EVTKESKVVK ETELPVEKNA VATAC
101: PPAYQYPRHG YTGSYASGKT NLQYQYLTQQ GRSAGNGQSY GGYMDNIYSN YGMCGPYTNG YGYGSYGYDS WKYMPNWYAV NNTYKPRNGY HGYGKENIEG
201: LNEMNRGPRA KGFNSQDGSK VMAVSLKEQR VTETEKLSED VSLLDPKDYN KIDFPETYTE AKFYVIKSYS EDDIHKSIKY SVWSSTPNGN KKLDASYNEA
301: KQKSDGCPVF LLFSVNTSGQ FVGLAEMVGP VDFNKTVEYW QQDKWIGCFP VKWHFVKDIP NSSLRHITLE NNENKPVTNS RDTQEVKLEQ GIKVIKIFKD
401: HASKTCILDD FEFYENRQKI IQERKSKHLQ IKKQTLVANA DKGVMSKINL VKPQESTTAS EDAAALGVAA EVTKESKVVK ETELPVEKNA VATAC
Arabidopsis Description
ECT3ECT3 [Source:UniProtKB/TrEMBL;Acc:A0A178UM32]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.