Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 3
- golgi 2
- plastid 3
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
23303719
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0292200-01 | |
| Os05t0136200-01 | |
| Os07t0637000-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13460.1 | Os01t0292200-01 | AT3G17510.1 | 16113215 |
| AT3G13460.1 | Os05t0136200-01 | AT3G17510.1 | 16113215 |
| AT3G13460.1 | Os07t0637000-01 | AT3G17510.1 | 16113215 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG40139 | Sorghum | plastid | 82.04 | 81.58 |
| HORVU4Hr1G072940.4 | Barley | cytosol | 79.63 | 75.88 |
| TraesCS4D01G273200.4 | Wheat | cytosol | 77.23 | 75.52 |
| TraesCS4A01G031600.2 | Wheat | cytosol | 77.65 | 75.31 |
| TraesCS4B01G274500.2 | Wheat | plastid | 81.19 | 74.84 |
| Zm00001d048424_P003 | Maize | plastid | 77.65 | 74.19 |
| Zm00001d027731_P012 | Maize | plastid | 80.06 | 70.49 |
| CDY57677 | Canola | mitochondrion | 12.59 | 52.05 |
| Os03t0748000-01 | Rice | plasma membrane | 48.66 | 52.04 |
| GSMUA_Achr4P14820_001 | Banana | cytosol | 24.33 | 51.96 |
| GSMUA_Achr7P27220_001 | Banana | cytosol | 47.52 | 50.83 |
| VIT_06s0004g00200.t01 | Wine grape | nucleus | 50.21 | 50.35 |
| VIT_08s0007g07450.t01 | Wine grape | cytosol | 49.22 | 50.14 |
| KRH43005 | Soybean | nucleus | 50.07 | 50.07 |
| Solyc01g028860.2.1 | Tomato | nucleus | 49.65 | 49.72 |
| CDY23602 | Canola | nucleus | 43.28 | 49.04 |
| KRH59123 | Soybean | nucleus | 48.94 | 48.87 |
| AT1G55500.5 | Thale cress | cytosol | 41.58 | 48.59 |
| CDY43989 | Canola | nucleus | 43.28 | 48.27 |
| AT3G13460.1 | Thale cress | cytosol | 45.12 | 47.83 |
| Bra027432.1-P | Field mustard | nucleus | 42.72 | 47.63 |
| PGSC0003DMT400061684 | Potato | endoplasmic reticulum, plasma membrane | 49.51 | 47.55 |
| CDY50448 | Canola | cytosol | 17.11 | 47.45 |
| CDX82538 | Canola | nucleus | 42.86 | 47.34 |
| Bra001506.1-P | Field mustard | nucleus | 42.72 | 47.26 |
| CDY07437 | Canola | nucleus | 28.01 | 47.03 |
| Bra039400.1-P | Field mustard | nucleus | 42.15 | 46.86 |
| CDX75712 | Canola | nucleus | 42.01 | 46.85 |
| Bra004105.1-P | Field mustard | nucleus | 26.17 | 46.72 |
| CDY07089 | Canola | nucleus | 41.73 | 46.38 |
| CDY39299 | Canola | nucleus | 27.72 | 46.34 |
| CDX91541 | Canola | mitochondrion | 10.61 | 46.01 |
| CDY24182 | Canola | nucleus | 35.08 | 45.84 |
| CDY21154 | Canola | nucleus | 26.17 | 45.45 |
| CDY56132 | Canola | nucleus | 28.71 | 45.41 |
| Bra008509.1-P | Field mustard | cytosol | 27.16 | 45.39 |
| CDY52966 | Canola | cytosol | 28.71 | 45.31 |
| CDY69959 | Canola | nucleus | 25.46 | 45.11 |
| Bra036423.1-P | Field mustard | nucleus | 25.88 | 45.07 |
| CDY50867 | Canola | nucleus | 25.32 | 44.75 |
| CDY42891 | Canola | nucleus | 25.32 | 44.75 |
| Bra031960.1-P | Field mustard | nucleus | 24.89 | 44.44 |
| CDY29972 | Canola | nucleus | 25.74 | 44.39 |
| AT3G03950.3 | Thale cress | cytosol | 26.31 | 43.46 |
| KRG94807 | Soybean | nucleus | 38.33 | 41.12 |
| AT5G61020.1 | Thale cress | cytosol | 28.15 | 40.2 |
| Os07t0170300-01 | Rice | plasma membrane | 34.23 | 40.2 |
| KRH06717 | Soybean | nucleus | 37.48 | 39.97 |
| KRH70155 | Soybean | nucleus | 34.65 | 38.89 |
| Bra018951.1-P | Field mustard | cytosol | 13.86 | 37.84 |
| Bra014253.1-P | Field mustard | cytosol | 15.56 | 36.91 |
| Bra038524.1-P | Field mustard | cytosol | 11.74 | 36.89 |
| Os08t0556000-01 | Rice | nucleus | 30.41 | 34.46 |
| Os04t0608800-01 | Rice | nucleus | 27.58 | 34.33 |
| Os08t0224200-01 | Rice | mitochondrion | 28.43 | 32.47 |
| Os01t0679900-01 | Rice | nucleus | 27.16 | 31.53 |
| Os05t0105600-01 | Rice | cytosol | 24.19 | 26.8 |
| Os03t0317000-01 | Rice | plasma membrane | 25.88 | 25.81 |
| Os04t0129300-01 | Rice | nucleus | 23.48 | 24.59 |
| Os01t0329800-01 | Rice | cytosol | 23.48 | 23.45 |
Protein Annotations
| MapMan:16.5.2.1 | Gene3D:3.10.590.10 | EntrezGene:4331683 | ProteinID:ABF94075.1 | ProteinID:BAF10936.1 | ProteinID:BAS82386.1 |
| ProteinID:BAS82387.1 | ncoils:Coil | ProteinID:EEE58351.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | EnsemblPlantsGene:Os03g0158500 | EnsemblPlants:Os03t0158500-01 | PFAM:PF04146 | PFscan:PS50882 |
| PANTHER:PTHR12357 | PANTHER:PTHR12357:SF30 | UniProt:Q10RI4 | UniParc:UPI0000DB44C4 | RefSeq:XP_015629860.1 | InterPro:YTH_domain |
| SEG:seg | : | : | : | : | : |
Description
YT521-B-like protein family protein. (Os03t0158500-01);Similar to YT521-B-like family protein, expressed. (Os03t0158500-02);Similar to YT521-B-like family protein, expressed. (Os03t0158500-03);Similar to YT521-B-like family protein, expressed. (Os03t0158500-04)
Coordinates
chr3:-:3126216..3130478
Molecular Weight (calculated)
76450.3 Da
IEP (calculated)
8.473
GRAVY (calculated)
-0.689
Length
707 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAVAPPQVP VVAPAPAAAA APPAPAPAAA ATAAPVADQT TDLLQKLSLD SQPKAVDAAT EPAGAKKGPA ASQPLSVAIP PERSITPVLQ DFMDPNMFYL
101: PAYYYGGYDG SVSEWDDYPR YVNPDGVEIT PAVYGDIYGY GYAPYGAYSP ASSPVPTVDG QMFGQHYQYP TSYYQPPTPV PSTTQGDLQP SANPDKPTAK
201: ADPAKTTTNG APNGTVHSNS GTVPLGSSQQ NSSLTPDGTY RAPLLGGVPS AGYLDSTYGY DSTGAHFAWY DGSAYTNGQQ RTTTTNHMSS STFSNGSSAR
301: TQNKGSTPQQ MGMNNRRPTT TTGSAAPTYP NRMYPSTRSY SQYGNSYKTG LSYSTNGYGS NGYGSNGYDS RLYGRWGLSM DNRYKPRGRG NGYYGFGNES
401: QDGTIELNRG PRSGRFKNQK LFGHTVTIAV KGQSLPTSDS MNATDVPDRT QFNRDDFPVQ YDDAKFFVIK SYSEDDIHKS IKYNVWASTT NGNKKLDAAY
501: QEAQAKSSKC PIFLFFSVNT SGQFVGVAEM TGAVDFEKTL EYWQQDKWNG SLSLKWHIVK DVPNNILKHI ILENNENKPV TNSRDTQEVN LDQGIQMLKI
601: FKEHVSKTSI LDDFAFYENR QKLMQEKRVK QQQIQKQVWD SRAPSSVTGE KQQDAATAKP KLPNGVNGEL KVPAENGTAP VVTYAAKVAQ TAATEKPALA
701: NGTVKAS
101: PAYYYGGYDG SVSEWDDYPR YVNPDGVEIT PAVYGDIYGY GYAPYGAYSP ASSPVPTVDG QMFGQHYQYP TSYYQPPTPV PSTTQGDLQP SANPDKPTAK
201: ADPAKTTTNG APNGTVHSNS GTVPLGSSQQ NSSLTPDGTY RAPLLGGVPS AGYLDSTYGY DSTGAHFAWY DGSAYTNGQQ RTTTTNHMSS STFSNGSSAR
301: TQNKGSTPQQ MGMNNRRPTT TTGSAAPTYP NRMYPSTRSY SQYGNSYKTG LSYSTNGYGS NGYGSNGYDS RLYGRWGLSM DNRYKPRGRG NGYYGFGNES
401: QDGTIELNRG PRSGRFKNQK LFGHTVTIAV KGQSLPTSDS MNATDVPDRT QFNRDDFPVQ YDDAKFFVIK SYSEDDIHKS IKYNVWASTT NGNKKLDAAY
501: QEAQAKSSKC PIFLFFSVNT SGQFVGVAEM TGAVDFEKTL EYWQQDKWNG SLSLKWHIVK DVPNNILKHI ILENNENKPV TNSRDTQEVN LDQGIQMLKI
601: FKEHVSKTSI LDDFAFYENR QKLMQEKRVK QQQIQKQVWD SRAPSSVTGE KQQDAATAKP KLPNGVNGEL KVPAENGTAP VVTYAAKVAQ TAATEKPALA
701: NGTVKAS
001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC
Arabidopsis Description
ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.