Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G273200.4 | Wheat | cytosol | 96.98 | 97.79 |
| TraesCS4B01G274500.2 | Wheat | plastid | 96.84 | 92.05 |
| HORVU4Hr1G072940.4 | Barley | cytosol | 93.0 | 91.37 |
| Os03t0158500-01 | Rice | nucleus | 75.31 | 77.65 |
| KXG40139 | Sorghum | plastid | 70.64 | 72.43 |
| Zm00001d048424_P003 | Maize | plastid | 67.35 | 66.35 |
| Zm00001d027731_P012 | Maize | plastid | 70.37 | 63.89 |
| TraesCS5A01G386600.2 | Wheat | nucleus | 45.82 | 50.38 |
| CDY57677 | Canola | mitochondrion | 11.66 | 49.71 |
| KRH43005 | Soybean | nucleus | 48.15 | 49.65 |
| GSMUA_Achr7P27220_001 | Banana | cytosol | 44.86 | 49.47 |
| KRH59123 | Soybean | nucleus | 47.87 | 49.29 |
| VIT_06s0004g00200.t01 | Wine grape | nucleus | 46.36 | 47.94 |
| CDY23602 | Canola | nucleus | 40.74 | 47.6 |
| VIT_08s0007g07450.t01 | Wine grape | cytosol | 45.27 | 47.55 |
| GSMUA_Achr4P14820_001 | Banana | cytosol | 21.54 | 47.43 |
| Solyc01g028860.2.1 | Tomato | nucleus | 45.68 | 47.17 |
| CDY43989 | Canola | nucleus | 40.47 | 46.53 |
| Bra027432.1-P | Field mustard | nucleus | 40.33 | 46.37 |
| AT1G55500.5 | Thale cress | cytosol | 38.41 | 46.28 |
| CDY50448 | Canola | cytosol | 16.19 | 46.27 |
| CDX82538 | Canola | nucleus | 40.19 | 45.78 |
| PGSC0003DMT400061684 | Potato | endoplasmic reticulum, plasma membrane | 45.95 | 45.52 |
| Bra001506.1-P | Field mustard | nucleus | 39.78 | 45.38 |
| Bra004105.1-P | Field mustard | nucleus | 24.55 | 45.2 |
| Bra039400.1-P | Field mustard | nucleus | 39.09 | 44.81 |
| CDX75712 | Canola | nucleus | 38.96 | 44.8 |
| AT3G13460.1 | Thale cress | cytosol | 40.88 | 44.68 |
| Bra008509.1-P | Field mustard | cytosol | 25.79 | 44.44 |
| CDY07089 | Canola | nucleus | 38.68 | 44.34 |
| CDX91541 | Canola | mitochondrion | 9.88 | 44.17 |
| CDY50867 | Canola | nucleus | 24.14 | 44.0 |
| CDY42891 | Canola | nucleus | 24.14 | 44.0 |
| CDY69959 | Canola | nucleus | 24.01 | 43.86 |
| CDY24182 | Canola | nucleus | 32.37 | 43.62 |
| CDY21154 | Canola | nucleus | 24.14 | 43.24 |
| CDY07437 | Canola | nucleus | 24.83 | 42.99 |
| Bra031960.1-P | Field mustard | nucleus | 23.32 | 42.93 |
| Bra036423.1-P | Field mustard | nucleus | 23.87 | 42.86 |
| CDY39299 | Canola | nucleus | 24.69 | 42.55 |
| CDY29972 | Canola | nucleus | 23.87 | 42.44 |
| CDY56132 | Canola | nucleus | 25.93 | 42.28 |
| CDY52966 | Canola | cytosol | 25.79 | 41.96 |
| TraesCS5A01G431200.1 | Wheat | nucleus | 33.74 | 41.77 |
| AT3G03950.3 | Thale cress | cytosol | 24.42 | 41.59 |
| AT5G61020.1 | Thale cress | cytosol | 27.16 | 40.0 |
| KRG94807 | Soybean | nucleus | 35.67 | 39.45 |
| TraesCS5A01G431100.1 | Wheat | cytosol | 33.74 | 38.32 |
| KRH06717 | Soybean | nucleus | 34.71 | 38.16 |
| KRH70155 | Soybean | nucleus | 31.41 | 36.35 |
| Bra018951.1-P | Field mustard | cytosol | 12.62 | 35.52 |
| Bra014253.1-P | Field mustard | cytosol | 14.4 | 35.23 |
| Bra038524.1-P | Field mustard | cytosol | 10.84 | 35.11 |
| TraesCS7A01G276800.3 | Wheat | nucleus | 29.22 | 34.08 |
| TraesCS1A01G044500.1 | Wheat | nucleus | 29.22 | 33.18 |
| TraesCS7A01G291700.1 | Wheat | cytosol | 24.97 | 30.85 |
| TraesCS3A01G267700.1 | Wheat | nucleus | 27.02 | 28.51 |
| TraesCS4A01G125600.3 | Wheat | cytosol, nucleus, plastid | 24.83 | 25.17 |
| TraesCS3A01G199100.2 | Wheat | cytosol | 22.5 | 23.8 |
| TraesCS2A01G011400.1 | Wheat | nucleus | 23.05 | 23.63 |
| TraesCS1A01G105700.1 | Wheat | cytosol | 19.07 | 19.8 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G031600.2 | EnsemblPlantsGene:TraesCS4A01G031600 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | ncoils:Coil | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF30 |
| PFAM:PF04146 | PFscan:PS50882 | SEG:seg | MapMan:16.5.2.1 | : | : |
Description
No Description!
Coordinates
chr4A:+:24753809..24757250
Molecular Weight (calculated)
78684.2 Da
IEP (calculated)
8.414
GRAVY (calculated)
-0.767
Length
729 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLESQPKAA EDGTELAGAP KQGPVASQPL SVSIPQDRSI TPVVQDFTDP NMFYLPAYYY GELGLPGYDG TMSEWDEYTR YVNQDGVEVT PAVYGDIYGY
101: GYAPYGAYSP ASSPVPTVDG QMFAAQHYQY PAYYQPPTPV SSTTQGEQQP SANADNKPAA AKADAAKTTT NVAPNGTAQS NSGTAPLGSS YQNSSLTPDG
201: TYRAPLLGGV PSTGYVDSTY GYDTTGAHYA WYDGSAYTNA QQRPTTANYT PSSAYNSNGS SARYQTKSPT PQQTGNRRPT TTTGSATPTY PNRMYSSTQS
301: YNQYGNSVKT GLMYGNTGYG STGYGSTGYG SSGYGSNGYG SSGYGSSGYG SNGYDSRLYG RWGVSMDSRY NRPRGRGNGY YGFGNESQDG TIELNRGPRS
401: GRFKNQKAFG HTVTIAVKGQ TLPSSENKNA SDIPDKAQFN LEDFPVQYDD AKFFVIKSYS EDDIHKSIKY NVWASTTNGN KKLDAAYQEA QAKGSSCPIF
501: LFFSVNTSGQ FVGVAEMTGP VDFEKTLEYW QQDKWNGSFS VKWHIVKDVP NNILKHIVLE NNEGKPVTNS RDTQDINLEQ GIQMLKIFKE HVSKTSILED
601: FAFYENRQKL MQEKRIKQQQ IQKQVWDSRA PNPVAGEKQQ EVANGKPKVS VPNGVNGEKQ QDAVNGKPKS PVANGVNGDA KVPAEKAAAP PAVTYAAKVA
701: QTAAAEKKPV ATEKKPVVAN GAVKTGVAA
101: GYAPYGAYSP ASSPVPTVDG QMFAAQHYQY PAYYQPPTPV SSTTQGEQQP SANADNKPAA AKADAAKTTT NVAPNGTAQS NSGTAPLGSS YQNSSLTPDG
201: TYRAPLLGGV PSTGYVDSTY GYDTTGAHYA WYDGSAYTNA QQRPTTANYT PSSAYNSNGS SARYQTKSPT PQQTGNRRPT TTTGSATPTY PNRMYSSTQS
301: YNQYGNSVKT GLMYGNTGYG STGYGSTGYG SSGYGSNGYG SSGYGSSGYG SNGYDSRLYG RWGVSMDSRY NRPRGRGNGY YGFGNESQDG TIELNRGPRS
401: GRFKNQKAFG HTVTIAVKGQ TLPSSENKNA SDIPDKAQFN LEDFPVQYDD AKFFVIKSYS EDDIHKSIKY NVWASTTNGN KKLDAAYQEA QAKGSSCPIF
501: LFFSVNTSGQ FVGVAEMTGP VDFEKTLEYW QQDKWNGSFS VKWHIVKDVP NNILKHIVLE NNEGKPVTNS RDTQDINLEQ GIQMLKIFKE HVSKTSILED
601: FAFYENRQKL MQEKRIKQQQ IQKQVWDSRA PNPVAGEKQQ EVANGKPKVS VPNGVNGEKQ QDAVNGKPKS PVANGVNGDA KVPAEKAAAP PAVTYAAKVA
701: QTAAAEKKPV ATEKKPVVAN GAVKTGVAA
001: MSTVAPPADQ AADVLKKLSL DSKSRTLEIP EPTKKTGVYQ YGAMDSNGQV PSFDRSLSPM LPSDALDPSV FYVPNVYQQP YYYGYGSDYT GYTNSESVDM
101: TSGAYGENAS LVYPQGYGYA AFPYSPATSP APQLGGDGQL YGAQQYQYPF PLTASSGPFA SSVPASTQSK LSTNKAANSA SAGIPKGMNG SAPVKPLNQS
201: ALYGNSALGG GLAAGYQDPR YSYDGFYTPV SWHDGSNFSD VQRSVSGSGV ASSYSKANNN VPATRNQNSS SNSHYTSMYQ PASMTGYAAQ GYYDRVSPNK
301: SYGQYGSTVR SGMGYGSSGY GSRTNERGWL NTDNKYRSRG RGNSYFYGNE NIDGLNELNR GPRAKGTKAT EEVSSEEVKK QTFDESNTEE TVTCVLPDRE
401: ECNRDDFPVE YKDAKFFIIK SYSEDDVHKS IKYNVWASTP NGNKKLDAAY QEAQQKSSGC PVFLFFSVNA SGQFIGLAEM KGPVDFNKNI EYWQQDKWTG
501: SFPLKWHILK DVPNSLLKHI TLEYNENKPV TNSRDTQEVK LEQGLKVVKI FKEHNSKTCI LDDFSFYEAR QKTILEKKAK QQQSQKQVWE GKTNDEKPGT
601: VDSTM
101: TSGAYGENAS LVYPQGYGYA AFPYSPATSP APQLGGDGQL YGAQQYQYPF PLTASSGPFA SSVPASTQSK LSTNKAANSA SAGIPKGMNG SAPVKPLNQS
201: ALYGNSALGG GLAAGYQDPR YSYDGFYTPV SWHDGSNFSD VQRSVSGSGV ASSYSKANNN VPATRNQNSS SNSHYTSMYQ PASMTGYAAQ GYYDRVSPNK
301: SYGQYGSTVR SGMGYGSSGY GSRTNERGWL NTDNKYRSRG RGNSYFYGNE NIDGLNELNR GPRAKGTKAT EEVSSEEVKK QTFDESNTEE TVTCVLPDRE
401: ECNRDDFPVE YKDAKFFIIK SYSEDDVHKS IKYNVWASTP NGNKKLDAAY QEAQQKSSGC PVFLFFSVNA SGQFIGLAEM KGPVDFNKNI EYWQQDKWTG
501: SFPLKWHILK DVPNSLLKHI TLEYNENKPV TNSRDTQEVK LEQGLKVVKI FKEHNSKTCI LDDFSFYEAR QKTILEKKAK QQQSQKQVWE GKTNDEKPGT
601: VDSTM
Arabidopsis Description
ECT4evolutionarily conserved C-terminal region 4 [Source:TAIR;Acc:AT1G55500]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.