Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX91541 | Canola | mitochondrion | 55.29 | 86.5 |
| CDY57677 | Canola | mitochondrion | 55.29 | 82.46 |
| CDY39299 | Canola | nucleus | 74.9 | 45.15 |
| CDY07437 | Canola | nucleus | 74.12 | 44.89 |
| CDY56132 | Canola | nucleus | 67.84 | 38.7 |
| CDY52966 | Canola | cytosol | 67.06 | 38.17 |
| AT5G61020.1 | Thale cress | cytosol | 60.0 | 30.91 |
| CDY51902 | Canola | cytosol | 17.25 | 28.39 |
| GSMUA_Achr4P14820_001 | Banana | cytosol | 30.98 | 23.87 |
| CDY21154 | Canola | nucleus | 37.65 | 23.59 |
| CDY42891 | Canola | nucleus | 36.86 | 23.5 |
| CDY50867 | Canola | nucleus | 36.86 | 23.5 |
| CDY29972 | Canola | nucleus | 37.65 | 23.41 |
| CDY69959 | Canola | nucleus | 36.47 | 23.31 |
| CDY24182 | Canola | nucleus | 49.02 | 23.11 |
| CDX88524 | Canola | cytosol | 40.0 | 23.08 |
| CDY56809 | Canola | cytosol | 40.39 | 22.99 |
| CDY22270 | Canola | cytosol | 40.39 | 22.99 |
| CDX87395 | Canola | cytosol | 40.0 | 22.97 |
| CDX79309 | Canola | nucleus | 41.18 | 20.63 |
| CDX68000 | Canola | nucleus | 40.78 | 20.43 |
| GSMUA_Achr7P01490_001 | Banana | nucleus | 44.31 | 20.18 |
| CDY07089 | Canola | nucleus | 49.8 | 19.97 |
| CDY23602 | Canola | nucleus | 48.24 | 19.71 |
| CDY43989 | Canola | nucleus | 48.24 | 19.4 |
| CDX75712 | Canola | nucleus | 47.84 | 19.24 |
| CDX82538 | Canola | nucleus | 48.24 | 19.22 |
| EER93313 | Sorghum | cytosol | 42.75 | 19.06 |
| TraesCS5A01G431200.1 | Wheat | nucleus | 43.53 | 18.85 |
| GSMUA_Achr4P28430_001 | Banana | nucleus, plastid | 45.1 | 18.7 |
| TraesCS5D01G439100.1 | Wheat | nucleus | 42.75 | 18.54 |
| GSMUA_Achr4P22630_001 | Banana | nucleus | 45.1 | 18.52 |
| Os07t0170300-01 | Rice | plasma membrane | 43.53 | 18.44 |
| Zm00001d034005_P003 | Maize | plasma membrane | 47.45 | 18.33 |
| KRH70155 | Soybean | nucleus | 45.1 | 18.25 |
| EER93461 | Sorghum | nucleus | 47.06 | 18.21 |
| VIT_08s0007g07450.t01 | Wine grape | cytosol | 49.02 | 18.01 |
| TraesCS5B01G433000.1 | Wheat | cytosol | 41.96 | 17.95 |
| GSMUA_Achr4P21380_001 | Banana | nucleus | 46.27 | 17.93 |
| GSMUA_Achr5P02830_001 | Banana | cytosol | 43.14 | 17.86 |
| CDX94944 | Canola | nucleus | 34.51 | 17.71 |
| CDY32718 | Canola | nucleus | 36.47 | 17.58 |
| CDY58572 | Canola | nucleus | 34.9 | 17.55 |
| CDY02802 | Canola | nucleus | 36.47 | 17.42 |
| TraesCS5A01G386600.2 | Wheat | nucleus | 45.1 | 17.35 |
| HORVU5Hr1G094950.6 | Barley | cytosol, nucleus | 45.1 | 17.29 |
| TraesCS5D01G439200.1 | Wheat | cytosol | 43.53 | 17.29 |
| TraesCS5A01G431100.1 | Wheat | cytosol | 43.53 | 17.29 |
| CDX88661 | Canola | nucleus | 34.51 | 17.25 |
| Os03t0748000-01 | Rice | plasma membrane | 44.71 | 17.25 |
| TraesCS5B01G391500.1 | Wheat | nucleus | 44.71 | 17.22 |
| TraesCS5D01G396400.3 | Wheat | nucleus | 44.71 | 17.22 |
| CDX93476 | Canola | nucleus | 33.73 | 17.2 |
| KRH06717 | Soybean | nucleus | 44.71 | 17.19 |
| KXG34475 | Sorghum | cytosol | 43.53 | 17.18 |
| TraesCS5B01G432900.2 | Wheat | extracellular | 43.53 | 17.13 |
| Os03t0158500-01 | Rice | nucleus | 47.45 | 17.11 |
| KRG94807 | Soybean | nucleus | 43.92 | 17.0 |
| HORVU5Hr1G104380.1 | Barley | plastid | 43.53 | 16.79 |
| CDY24224 | Canola | nucleus | 40.39 | 16.78 |
| CDY44025 | Canola | nucleus | 40.78 | 16.72 |
| CDY67303 | Canola | nucleus | 34.12 | 16.7 |
| CDX90116 | Canola | nucleus | 34.12 | 16.7 |
| CDY05744 | Canola | cytosol | 8.24 | 16.67 |
| CDY23562 | Canola | nucleus | 40.39 | 16.61 |
| CDY43378 | Canola | nucleus | 40.0 | 16.61 |
| KXG40139 | Sorghum | plastid | 46.27 | 16.6 |
| GSMUA_Achr7P27220_001 | Banana | cytosol | 42.75 | 16.49 |
| Zm00001d007890_P002 | Maize | mitochondrion | 41.96 | 16.39 |
| TraesCS4D01G273200.4 | Wheat | cytosol | 46.27 | 16.32 |
| TraesCS4A01G031600.2 | Wheat | cytosol | 46.27 | 16.19 |
| CDX93645 | Canola | nucleus | 38.82 | 16.18 |
| HORVU5Hr1G104390.3 | Barley | plastid | 43.53 | 16.13 |
| CDY43306 | Canola | cytosol | 38.43 | 15.99 |
| Zm00001d048424_P003 | Maize | plastid | 46.27 | 15.95 |
| CDY60520 | Canola | cytosol | 8.24 | 15.91 |
| HORVU4Hr1G072940.4 | Barley | cytosol | 46.27 | 15.9 |
| CDY11758 | Canola | nucleus, plastid | 33.73 | 15.52 |
| Zm00001d018896_P002 | Maize | mitochondrion | 42.35 | 15.3 |
| TraesCS4B01G274500.2 | Wheat | plastid | 45.88 | 15.25 |
| Zm00001d027731_P012 | Maize | plastid | 46.27 | 14.69 |
Protein Annotations
| EnsemblPlants:CDY50448 | EnsemblPlantsGene:GSBRNA2T00096727001 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF56 | PFAM:PF04146 |
| PFscan:PS50882 | ProteinID:CDY50448 | ProteinID:CDY50448.1 | SEG:seg | UniParc:UPI0004EE522B | UniProt:A0A078IN43 |
| MapMan:16.5.2.1 | : | : | : | : | : |
Description
BnaC04g24940DBnaC04g24940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IN43]
Coordinates
chrLK032912:+:1870..5728
Molecular Weight (calculated)
28867.5 Da
IEP (calculated)
7.780
GRAVY (calculated)
-0.735
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLQCDVLIS EADVYGGNSN NGFSTKKKLG YNNNNGYYGG YYPQAYQYYP RYGYDMMNYA SGKTTNTTLQ YSYLGRSDKR FFSNTYTNAK LFVIKSYSED
101: DIHKSIKYNV WSSTSNGNKK LNTAYNNEHY KKNSSCPIFL IFSVNTSGQF VGLAEMMAEC WQQDKWVGCF PVKCHIVKDI PNSSLRHITL ENNENKPVTN
201: SRDTQEVKIE QEVEQSFTAS DKKATPKDKS KETSVIAEVA EEISQNGVAE VASTC
101: DIHKSIKYNV WSSTSNGNKK LNTAYNNEHY KKNSSCPIFL IFSVNTSGQF VGLAEMMAEC WQQDKWVGCF PVKCHIVKDI PNSSLRHITL ENNENKPVTN
201: SRDTQEVKIE QEVEQSFTAS DKKATPKDKS KETSVIAEVA EEISQNGVAE VASTC
001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC
Arabidopsis Description
ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.