Factsheet for GSMUA_Achr4P21380_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P25010_001
GSMUA_Achr3P13480_001
GSMUA_Achr8P10920_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13460.1	GSMUA_Achr11P...	AT3G17510.1	16113215
AT3G13460.1	GSMUA_Achr11P...	AT3G17510.1	16113215
AT3G13460.1	GSMUA_Achr1P25010_001	AT3G17510.1	16113215
AT3G13460.1	GSMUA_Achr3P13480_001	AT3G17510.1	16113215
AT3G13460.1	GSMUA_Achr8P10920_001	AT3G17510.1	16113215
AT3G13460.1	GSMUA_AchrUn_...	AT3G17510.1	16113215

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P01490_001	Banana	nucleus	69.45	81.61
GSMUA_Achr4P22630_001	Banana	nucleus	74.62	79.07
GSMUA_Achr5P02830_001	Banana	cytosol	72.34	77.27
GSMUA_Achr4P28430_001	Banana	nucleus, plastid	69.3	74.15
VIT_06s0004g00200.t01	Wine grape	nucleus	59.42	55.46
KRH59123	Soybean	nucleus	57.9	53.81
KRH43005	Soybean	nucleus	57.75	53.75
GSMUA_Achr7P27220_001	Banana	cytosol	53.95	53.71
Solyc01g028860.2.1	Tomato	nucleus	56.53	52.69
VIT_08s0007g07450.t01	Wine grape	cytosol	55.32	52.45
PGSC0003DMT400061684	Potato	endoplasmic reticulum, plasma membrane	56.38	50.41
AT1G55500.5	Thale cress	cytosol	46.2	50.25
CDY57677	Canola	mitochondrion	12.92	49.71
GSMUA_Achr4P14820_001	Banana	cytosol	24.92	49.55
AT3G13460.1	Thale cress	cytosol	49.85	49.18
CDX75712	Canola	nucleus	46.5	48.27
CDX82538	Canola	nucleus	46.2	47.5
CDY21154	Canola	nucleus	29.18	47.17
Bra027432.1-P	Field mustard	nucleus	45.44	47.16
CDY43989	Canola	nucleus	45.44	47.16
Bra001506.1-P	Field mustard	nucleus	45.74	47.1
CDY07437	Canola	nucleus	30.09	47.03
Bra031960.1-P	Field mustard	nucleus	28.27	46.97
CDY23602	Canola	nucleus	44.53	46.96
CDY69959	Canola	nucleus	28.42	46.87
Bra036423.1-P	Field mustard	nucleus	28.88	46.8
CDY56132	Canola	nucleus	31.76	46.76
CDY24182	Canola	nucleus	38.3	46.58
Bra008509.1-P	Field mustard	cytosol	29.94	46.57
Bra004105.1-P	Field mustard	nucleus	27.96	46.46
CDY52966	Canola	cytosol	31.61	46.43
CDY50448	Canola	cytosol	17.93	46.27
CDY50867	Canola	nucleus	28.12	46.25
CDY42891	Canola	nucleus	28.12	46.25
CDY39299	Canola	nucleus	29.48	45.86
CDY29972	Canola	nucleus	28.57	45.85
CDY07089	Canola	nucleus	43.92	45.44
Bra039400.1-P	Field mustard	nucleus	43.62	45.13
AT3G03950.3	Thale cress	cytosol	28.88	44.39
CDX91541	Canola	mitochondrion	10.94	44.17
KRH06717	Soybean	nucleus	44.07	43.74
KRG94807	Soybean	nucleus	43.77	43.7
AT5G61020.1	Thale cress	cytosol	31.46	41.82
KRH70155	Soybean	nucleus	39.97	41.75
GSMUA_Achr1P10560_001	Banana	nucleus	25.38	37.53
GSMUA_Achr6P12810_001	Banana	nucleus	19.76	36.93
Bra018951.1-P	Field mustard	cytosol	14.44	36.68
Bra038524.1-P	Field mustard	cytosol	12.31	36.0
Bra014253.1-P	Field mustard	cytosol	16.26	35.91
GSMUA_Achr4P12480_001	Banana	cytosol	30.24	34.25
GSMUA_Achr4P11560_001	Banana	nucleus	33.74	34.21
GSMUA_Achr6P26690_001	Banana	cytosol	30.85	33.33
GSMUA_Achr9P06180_001	Banana	endoplasmic reticulum, plasma membrane	30.55	32.47
GSMUA_Achr4P04600_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	33.89	28.92
GSMUA_Achr1P24980_001	Banana	nucleus	29.48	23.37
GSMUA_Achr8P29890_001	Banana	cytosol	26.9	21.82

Protein Annotations

EnsemblPlants:GSMUA_Achr4P21380_001	EnsemblPlants:GSMUA_Achr4T21380_001	EnsemblPlantsGene:GSMUA_Achr4G21380_001	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF63
PFAM:PF04146	PFscan:PS50882	SEG:seg	UniParc:UPI000295D598	UniProt:M0SQV1	MapMan:16.5.2.1

Description

YT521-B-like family domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G21380_001]

Coordinates

chr4:+:21879708..21884239

Molecular Weight (calculated)

73123.0 Da

IEP (calculated)

8.512

GRAVY (calculated)

-0.757

Length

658 amino acids

Sequence
(BLAST)

001: MATVATPPSA DQATDLIQKL SLDTANKSND SSEVKKKPSG VQYGSANGGE APIASIPTYE RSLTPLLQEH MDAGMCYVPN GYTPSFYYGG YDGSMAEWED
101: YPRYVNSDGV EVPPPGVYGD MYHHGYGYAP YGPYPSPGSP VPTLGHNGQL YGPQHYQFPA TYYQPPTATS APDTTSQTPS SKREVSTSTA ASLPSIPVDT
201: TKSDSNETVK ASTNGNNGSA KLKPSQQNSS LNSNGSLGKG AFPGGHPSSG YQDPRFGFDG MWSPVPWYDS LMFPDGQQRP TTANTVSSTR NQNLRPLPQL
301: MGMHAPRPAG AGMVNKMYPN HRMYGQHANG FRSGQSFYSS MYDSRMNGRW GMSVDSKYKP RGRSNGFYGY GNENLDGLSE LNKGPRSGRF RNQKGFGPTI
401: TLAVRGQSLP ANVNIQDSAV IPERDQYNKS DFPETYSEAK FFIIKSYSED DIHKSIKYNV WASTPHGNKK LDAAYQESKE KTSGCPVFLF FSVNTSGQFV
501: GVAEMVGPVD FNKTLDYWQQ DKWVGYFPVK WHIVKDVPNN ILKHITLENN DNKPVTNSRD TQEVKLDQGL QLLKLFKEHA SKTCILDDFD FYETRQKVMQ
601: EKRTKQQQLQ KKACSDSTSS ELCYTVVLLH VTRHNNAVTY TVLRYIHFTM FKFDHSNN

Best Arabidopsis Sequence Match ( AT3G13460.1 )
(BLAST)

001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC

Arabidopsis Description

ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.