Factsheet for GSMUA_Achr4P22630_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P25010_001
GSMUA_Achr3P13480_001
GSMUA_Achr8P10920_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13460.1	GSMUA_Achr11P...	AT3G17510.1	16113215
AT3G13460.1	GSMUA_Achr11P...	AT3G17510.1	16113215
AT3G13460.1	GSMUA_Achr1P25010_001	AT3G17510.1	16113215
AT3G13460.1	GSMUA_Achr3P13480_001	AT3G17510.1	16113215
AT3G13460.1	GSMUA_Achr8P10920_001	AT3G17510.1	16113215
AT3G13460.1	GSMUA_AchrUn_...	AT3G17510.1	16113215

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P01490_001	Banana	nucleus	74.4	82.5
GSMUA_Achr4P21380_001	Banana	nucleus	79.07	74.62
GSMUA_Achr5P02830_001	Banana	cytosol	73.91	74.51
GSMUA_Achr4P28430_001	Banana	nucleus, plastid	73.59	74.31
GSMUA_Achr7P27220_001	Banana	cytosol	56.2	52.8
VIT_06s0004g00200.t01	Wine grape	nucleus	59.42	52.34
Solyc01g028860.2.1	Tomato	nucleus	57.17	50.28
VIT_08s0007g07450.t01	Wine grape	cytosol	55.39	49.57
KRH59123	Soybean	nucleus	56.2	49.29
KRH43005	Soybean	nucleus	55.72	48.94
AT1G55500.5	Thale cress	cytosol	47.67	48.93
CDY57677	Canola	mitochondrion	13.37	48.54
PGSC0003DMT400061684	Potato	endoplasmic reticulum, plasma membrane	57.33	48.37
GSMUA_Achr4P14820_001	Banana	cytosol	25.6	48.04
AT3G13460.1	Thale cress	cytosol	50.89	47.38
CDX75712	Canola	nucleus	47.67	46.69
CDX82538	Canola	nucleus	47.83	46.41
Bra001506.1-P	Field mustard	nucleus	47.67	46.32
CDY21154	Canola	nucleus	30.27	46.19
Bra036423.1-P	Field mustard	nucleus	29.95	45.81
Bra031960.1-P	Field mustard	nucleus	28.99	45.45
CDY24182	Canola	nucleus	39.45	45.29
Bra008509.1-P	Field mustard	cytosol	30.76	45.15
CDY07437	Canola	nucleus	30.6	45.13
CDY50448	Canola	cytosol	18.52	45.1
CDY42891	Canola	nucleus	28.99	45.0
CDY50867	Canola	nucleus	28.99	45.0
CDY56132	Canola	nucleus	32.37	44.97
CDY23602	Canola	nucleus	45.09	44.87
CDY52966	Canola	cytosol	32.37	44.87
CDY69959	Canola	nucleus	28.82	44.86
CDY43989	Canola	nucleus	45.73	44.8
Bra004105.1-P	Field mustard	nucleus	28.5	44.7
Bra027432.1-P	Field mustard	nucleus	45.57	44.64
CDY29972	Canola	nucleus	29.47	44.63
CDY39299	Canola	nucleus	29.95	43.97
CDY07089	Canola	nucleus	44.61	43.55
Bra039400.1-P	Field mustard	nucleus	44.44	43.4
AT3G03950.3	Thale cress	cytosol	29.63	42.99
KRG94807	Soybean	nucleus	45.41	42.79
KRH06717	Soybean	nucleus	45.41	42.53
CDX91541	Canola	mitochondrion	10.79	41.1
AT5G61020.1	Thale cress	cytosol	32.21	40.4
KRH70155	Soybean	nucleus	40.74	40.16
GSMUA_Achr1P10560_001	Banana	nucleus	26.09	36.4
GSMUA_Achr6P12810_001	Banana	nucleus	20.45	36.08
GSMUA_Achr4P12480_001	Banana	cytosol	33.49	35.8
Bra018951.1-P	Field mustard	cytosol	14.49	34.75
Bra014253.1-P	Field mustard	cytosol	16.43	34.23
GSMUA_Achr4P11560_001	Banana	nucleus	35.75	34.21
Bra038524.1-P	Field mustard	cytosol	12.08	33.33
GSMUA_Achr6P26690_001	Banana	cytosol	31.88	32.51
GSMUA_Achr9P06180_001	Banana	endoplasmic reticulum, plasma membrane	31.56	31.66
GSMUA_Achr4P04600_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	35.75	28.79
GSMUA_Achr1P24980_001	Banana	nucleus	30.76	23.01
GSMUA_Achr8P29890_001	Banana	cytosol	28.02	21.45

Protein Annotations

EnsemblPlants:GSMUA_Achr4P22630_001	EnsemblPlants:GSMUA_Achr4T22630_001	EnsemblPlantsGene:GSMUA_Achr4G22630_001	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF63
PFAM:PF04146	PFscan:PS50882	SEG:seg	UniParc:UPI0002967E6D	UniProt:M0SR76	MapMan:16.5.2.1

Description

YT521-B-like family domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr4G22630_001]

Coordinates

chr4:-:22919070..22923623

Molecular Weight (calculated)

68595.1 Da

IEP (calculated)

8.685

GRAVY (calculated)

-0.732

Length

621 amino acids

Sequence
(BLAST)

001: MAAVSPAPPA DQATDLMQKL SLDSKNKSDD SSDVSKKPSG VQYGPANGRE LPIAPIPTCK RSLTPLLQEH MDASMCYFPN GYTSPFYYGG YDASITEWED
101: YPRYVSPDGM EVPPLGVYGD MYQHGYGYAP YTPYSAPGSP VPTLGHNSQL YGPQQYQFPT TYYHSPAPTS APYTTSQAPI SEGDVSTSAA ANLTPIQSDT
201: AKHNSNGVAK GSTNDNNESG KPKPSQHNLS NPGGSFGKGA LPGSLPSSGY QDPRFGFGGM WSSVPWSDGP IVPDGQQRSP TANAVSSMTS HISNTTSTRN
301: QNLHPVPHLA GMHAPRPAAP GIVNKMYPNS RMYGQNINGF IVGQNFCSNM YNSRMNGRWG MPMDIKYKPR GRGNGFYGYG NENLDGLSEL NKGPRAGRFR
401: NQVFGPNITL AVRGQSLPAN LNVQDSTVIP EKEQYNKSDF PETYSDAKFF IIKSYSEDDI HKSIKYNVWA STPHGNKKLD AAYQESKEKT NGCPVFLFFS
501: VNTSGQFVGV AEMVGRVDFN KTLDYWQQDK WIGCFPVKWH IVKDVPNNIL KHITLENNEN KPVTNSRDTQ EVKLEQGLQL LKLFKEHVGK TSILDDFSFY
601: ETRQKVMQEK RTKQHQLQKK A

Best Arabidopsis Sequence Match ( AT3G13460.1 )
(BLAST)

001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC

Arabidopsis Description

ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.