Factsheet for VIT_06s0004g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g00830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13460.1	VIT_05s0020g00830.t01	AT3G17510.1	16113215

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43005	Soybean	nucleus	73.33	73.13
KRH59123	Soybean	nucleus	72.91	72.6
Solyc01g028860.2.1	Tomato	nucleus	66.95	66.86
VIT_08s0007g07450.t01	Wine grape	cytosol	62.84	63.83
PGSC0003DMT400061684	Potato	endoplasmic reticulum, plasma membrane	66.52	63.72
AT1G55500.5	Thale cress	cytosol	54.04	62.98
GSMUA_Achr7P01490_001	Banana	nucleus	49.22	61.96
AT3G13460.1	Thale cress	cytosol	58.3	61.62
CDX82538	Canola	nucleus	55.6	61.25
CDX75712	Canola	nucleus	54.89	61.04
Bra001506.1-P	Field mustard	nucleus	55.32	61.03
CDY23602	Canola	nucleus	53.19	60.1
CDY43989	Canola	nucleus	53.62	59.62
CDY24182	Canola	nucleus	45.67	59.52
Bra027432.1-P	Field mustard	nucleus	53.48	59.46
GSMUA_Achr4P21380_001	Banana	nucleus	55.46	59.42
GSMUA_Achr4P22630_001	Banana	nucleus	52.34	59.42
CDY07089	Canola	nucleus	53.48	59.28
Bra039400.1-P	Field mustard	nucleus	53.33	59.12
GSMUA_Achr5P02830_001	Banana	cytosol	50.92	58.28
GSMUA_Achr7P27220_001	Banana	cytosol	54.47	58.09
EER93461	Sorghum	nucleus	53.05	56.75
GSMUA_Achr4P28430_001	Banana	nucleus, plastid	49.36	56.59
Os03t0748000-01	Rice	plasma membrane	52.62	56.13
Zm00001d034005_P003	Maize	plasma membrane	51.77	55.3
TraesCS5D01G396400.3	Wheat	nucleus	51.21	54.53
TraesCS5B01G391500.1	Wheat	nucleus	51.21	54.53
TraesCS5A01G386600.2	Wheat	nucleus	51.06	54.3
HORVU5Hr1G094950.6	Barley	cytosol, nucleus	51.06	54.14
GSMUA_Achr4P14820_001	Banana	cytosol	23.83	50.76
Os03t0158500-01	Rice	nucleus	50.35	50.21
KXG40139	Sorghum	plastid	50.21	49.79
TraesCS4D01G273200.4	Wheat	cytosol	47.94	46.75
TraesCS4A01G031600.2	Wheat	cytosol	47.94	46.36
Zm00001d048424_P003	Maize	plastid	48.51	46.22
EER93313	Sorghum	cytosol	37.3	45.98
HORVU4Hr1G072940.4	Barley	cytosol	48.09	45.69
TraesCS5B01G433000.1	Wheat	cytosol	38.3	45.3
TraesCS4B01G274500.2	Wheat	plastid	49.22	45.24
TraesCS5A01G431200.1	Wheat	nucleus	37.59	44.99
TraesCS5D01G439100.1	Wheat	nucleus	37.45	44.9
Os07t0170300-01	Rice	plasma membrane	38.01	44.52
KXG34475	Sorghum	cytosol	40.0	43.65
Zm00001d027731_P012	Maize	plastid	49.36	43.34
TraesCS5A01G431100.1	Wheat	cytosol	38.3	42.06
TraesCS5B01G432900.2	Wheat	extracellular	38.3	41.67
TraesCS5D01G439200.1	Wheat	cytosol	37.73	41.43
Zm00001d007890_P002	Maize	mitochondrion	37.73	40.74
HORVU5Hr1G104380.1	Barley	plastid	38.16	40.7
VIT_09s0054g01600.t01	Wine grape	nucleus	37.02	39.19
Zm00001d018896_P002	Maize	mitochondrion	39.15	39.09
HORVU5Hr1G104390.3	Barley	plastid	36.88	37.79
VIT_19s0085g01100.t01	Wine grape	nucleus	31.21	37.23
VIT_01s0010g03690.t01	Wine grape	cytosol	28.94	35.66
VIT_11s0065g00160.t01	Wine grape	nucleus	32.62	31.29
VIT_05s0020g00460.t01	Wine grape	cytosol	30.92	30.53
VIT_12s0035g00970.t01	Wine grape	plastid	28.23	28.11

Protein Annotations

EntrezGene:100253534	wikigene:100253534	MapMan:16.5.2.1	Gene3D:3.10.590.10	ProteinID:CCB43818	ProteinID:CCB43818.1
UniProt:F6GUP1	EMBL:FN594951	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR007275	EntrezGene:LOC100253534	wikigene:LOC100253534	PFAM:PF04146	PFscan:PS50882	PANTHER:PTHR12357
PANTHER:PTHR12357:SF63	TIGR:TC62838	UniParc:UPI0001983648	ArrayExpress:VIT_06s0004g00200	EnsemblPlantsGene:VIT_06s0004g00200	EnsemblPlants:VIT_06s0004g00200.t01
unigene:Vvi.3932	RefSeq:XP_002285750	RefSeq:XP_002285750.1	InterPro:YTH_domain	SEG:seg	:

Description

No Description!

Coordinates

chr6:-:326435..331213

Molecular Weight (calculated)

76901.2 Da

IEP (calculated)

7.640

GRAVY (calculated)

-0.761

Length

705 amino acids

Sequence
(BLAST)

001: MAAVAPPADQ AAELLQKLSL DSQTKTLEIP EPTKKPSGNQ FGAVDGGDAA NGQNQSCERS VTPLLQEFMD PSVCYVPNGY SSYYYGGYDG TTNEWEDYSR
101: YMNPEGVEMP AGVYGDNGSL MYHHGYGYAP YGPYPPAGSP VPTVGHDGQL YGPQHYQYPA PYFQPPTPTS GPYNPSPGAP PPGEVTTSVA ADQKPLSVET
201: ANGNSNGIAS GGAMKGNNGS APVKPTYQNS PFNSNGSYGR GALPGGVPAS GYQDPRFAFD GLRSPLPWLD GPVFSDPRPV TSTSITSSIS NANNVTASRN
301: LRPHSHFMGL QHPRPMSGMG TAHGFMNRMY PNKLYGQYGN TVRSGLGFGS NAYDSRTNGR SWLAVDNKYK PRGRGIGFFG YGNENMDGLN ELNRGPRAKS
401: SKNQKGLAPV TAKGQNVQSN GSNDEEKDRT SVFPDRDQYN HADFPVEHTE AKFFIIKSYS EDDVHKSIKY NVWASTPNGN KKLDAAYREA QEKSAGCPVF
501: LFFSVNTSGQ FVGLAEMVGH VDFHKNVEYW QQDKWNGCFS VKWHVVKDVP NSLLKHITLE NNENKPVTNS RDTQEVKLEQ GLQMLKIFKE HCSKTCILDD
601: FAFYESRQKT IQEKKAKQQQ FQKQVWEGKP TDEKNGELKP QKSLEVASDL IKESTPAVQA NGDRKVFENG SVAKSGDAPK AFKPSIVSEK RIVANGVANG
701: VANGC

Best Arabidopsis Sequence Match ( AT3G13460.1 )
(BLAST)

001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC

Arabidopsis Description

ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.