Factsheet for VIT_11s0065g00160.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002008_P001	Maize	cytosol	7.07	71.23
VIT_09s0054g01600.t01	Wine grape	nucleus	38.78	42.79
Solyc05g032850.2.1	Tomato	nucleus	34.42	41.89
AT5G58190.2	Thale cress	nucleus	29.93	41.67
CDY32718	Canola	nucleus	29.12	40.45
CDY02802	Canola	nucleus	29.39	40.45
Os08t0556000-01	Rice	nucleus	34.29	40.38
CDX88661	Canola	nucleus	27.48	39.61
GSMUA_Achr4P12480_001	Banana	cytosol	31.29	39.59
Bra006780.1-P	Field mustard	cytosol	27.35	39.49
CDY58572	Canola	nucleus	27.21	39.45
HORVU1Hr1G008330.2	Barley	nucleus	34.42	39.41
EES14722	Sorghum	nucleus	31.84	39.39
TraesCS1D01G045100.1	Wheat	nucleus	34.29	39.25
TraesCS1A01G044500.1	Wheat	nucleus	34.29	39.25
VIT_01s0010g03690.t01	Wine grape	cytosol	30.48	39.16
Zm00001d049360_P004	Maize	extracellular	31.7	39.09
Bra020382.1-P	Field mustard	nucleus	29.39	39.06
TraesCS1B01G057800.3	Wheat	nucleus	34.01	38.94
KXG25412	Sorghum	cytosol	33.61	38.65
Zm00001d024339_P001	Maize	extracellular	31.02	38.51
GSMUA_Achr1P10560_001	Banana	nucleus	22.99	37.98
Os04t0608800-01	Rice	nucleus	29.25	37.85
TraesCS7A01G276800.3	Wheat	nucleus	32.11	37.76
TraesCS7D01G276800.4	Wheat	nucleus	32.11	37.76
TraesCS7B01G174500.1	Wheat	nucleus	30.48	37.4
Os08t0224200-01	Rice	mitochondrion	31.29	37.16
HORVU7Hr1G069070.2	Barley	cytosol	29.25	36.44
GSMUA_Achr4P11560_001	Banana	nucleus	32.11	36.36
TraesCS7A01G291700.1	Wheat	cytosol	29.12	36.27
Zm00001d031981_P002	Maize	cytosol	31.97	36.1
TraesCS7B01G182100.2	Wheat	cytosol	28.98	35.98
KXG27074	Sorghum	cytosol	26.12	34.78
Zm00001d008913_P001	Maize	cytosol, nucleus, peroxisome	18.64	34.34
TraesCS7D01G285000.1	Wheat	endoplasmic reticulum	28.57	34.31
Zm00001d002372_P002	Maize	nucleus	25.58	34.06
VIT_06s0004g00200.t01	Wine grape	nucleus	31.29	32.62
HORVU7Hr1G058250.46	Barley	cytosol, plastid	20.95	32.49
GSMUA_Achr4P04600_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	33.2	31.65
VIT_19s0085g01100.t01	Wine grape	nucleus	25.31	31.47
VIT_08s0007g07450.t01	Wine grape	cytosol	28.84	30.55
Zm00001d047072_P001	Maize	mitochondrion	18.78	28.22
VIT_05s0020g00460.t01	Wine grape	cytosol	25.58	26.33
VIT_12s0035g00970.t01	Wine grape	plastid	24.35	25.28

Protein Annotations

EntrezGene:100241633	MapMan:16.5.2.1	Gene3D:3.10.590.10	EMBL:AM471162	ProteinID:CAN81475	ProteinID:CAN81475.1
ProteinID:CCB48908	ProteinID:CCB48908.1	UniProt:F6H9N9	EMBL:FN595502	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	InterPro:IPR007275	PFAM:PF04146	PFscan:PS50882
PANTHER:PTHR12357	PANTHER:PTHR12357:SF56	UniParc:UPI0002108190	ArrayExpress:VIT_11s0065g00160	EnsemblPlantsGene:VIT_11s0065g00160	EnsemblPlants:VIT_11s0065g00160.t01
RefSeq:XP_010656695.1	InterPro:YTH_domain	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:-:13546517..13555008

Molecular Weight (calculated)

80900.8 Da

IEP (calculated)

4.691

GRAVY (calculated)

-0.640

Length

735 amino acids

Sequence
(BLAST)

001: MAENAQQERG RSASTGERPV EPANLREQPN LLEDERVPRV VADQPISFDA IGDFNAGYPQ DAYASINRPF YYGGYDNSTS YWDGYPHYVN ADSMQVFPPV
101: IYNDNPSLVF SSGYGFNPQM AYGQYTNVAT PLPSLMVDRQ LYSPHQNPFS QPYYPQSIPS VPNISSAVSV PQTELMAPES SVQEGFSGNM RSSQGSSYVI
201: QFGSFGRGGL SQNSAYGPGS SNFQGEFVPP NFLPNQSNLP EADVSLSSVT SQAAHPQPVG ILGSYELNVR QRAAHGLGLV PSSSNIFYPD GGLYESTNFG
301: GASVSPLGAN DRNRLILDKG KIRERDRSSG VFSTDSSNFS SDRNRGPRAS KPKGQSTSGQ GVSSSSRKSD ASNSVVHFDS YNQPDFVTDY ENAKFFIIKS
401: YSEDNVHRSI KYSVWASTAL GNRKLDAAYQ KAKEIETNCP IFLCFSVNAS SQFCGVAEMV GPVNFEKDAE YWQQDRWSGL FPVKWHIIKD VPNSLFRHIL
501: LENNENKPVT HSRDTQEVNL EQGIEMLKIF KSYDAHTSIL EDFDFYEQRE RASKERKARQ QACSTTKSPG SEESVNHVSN SFSQSLQLEE SDREVIATEW
601: GDNSRTESGA HCLEESGEAV EPERGCSTTT GALVSLADDS MNQMSDSFAQ TLRLEGSIKE LRAASSSGTD AEVSLDDAIT LMTLESKKNN KELPRAGRIN
701: SPRPDAFVLL VDYPKGQISD SSVQSPQLEE SSKEV

Best Arabidopsis Sequence Match ( AT3G13060.2 )
(BLAST)

001: MATTQSHTSD LTSEEQPASL DIMKEQTVPA NNETSASFKS SQEAPVVVHP AKVAPLTGPY GLAGDFAGHL PSSILSPQAQ GFYYRGYENP TGEWDEYSSY
101: VNVEGLDITS PVGFNENASL VYQTGYGYNP QMPYGPYSPA ASPLPSEGQL YSPQQFPFSG ASPYYQQVVP PSMQYITSPT QPELTSLVGV DQQGDNIGPR
201: QSYHPHPIGP FNGNQPNLGF PEWQQGFDGG IWSDWSKPSD MHRHSSSISP ALSPQPLGSY GSYGQNIPMG SQRQRSFYGF GSGSNSYNRG YMHSGGRGQG
301: SNYGSRLISN VGMGNQGWIG VDNSRGRGRV SDPSLGGAYN GTFDILNEQN RGPRASKPKT QVLEELDSAA DSKKNNKGSA KEHEESNNAD FVTDYTNAKL
401: FIIKSYSEDN VHKSIKYNVW ASTPNGNKKL DAAYREAKDE KEPCPLFLLF SVNASSQFCG VAEMVGPVDF EKSVDYWQQD KWSGQFPVKW HIIKDVPNSQ
501: FRHIILENND NKPVTNSRDT QEVKLEQGIE MLKIFKNYDA DTSILDDFGF YEEREKIIQD RKARRQPSLP SAGVVAGENE HKPASAALPT DFMKNMSKSF
601: AQVVRLDEGS KEAVKASSSP DAITTAAVSS GQSN

Arabidopsis Description

ECT5Evolutionarily conserved C-terminal region 5 [Source:UniProtKB/TrEMBL;Acc:Q0WR25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.