Factsheet for VIT_09s0054g01600.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002008_P001	Maize	cytosol	8.71	79.45
KRH46969	Soybean	endoplasmic reticulum, extracellular	66.52	68.47
KRH44697	Soybean	mitochondrion	65.62	66.41
VIT_01s0010g03690.t01	Wine grape	cytosol	48.5	56.47
GSMUA_Achr4P12480_001	Banana	cytosol	47.75	54.73
Os08t0556000-01	Rice	nucleus	49.85	53.21
GSMUA_Achr4P11560_001	Banana	nucleus	50.6	51.93
TraesCS1A01G044500.1	Wheat	nucleus	49.7	51.56
HORVU1Hr1G008330.2	Barley	nucleus	49.55	51.4
KXG25412	Sorghum	cytosol	49.1	51.17
TraesCS1B01G057800.3	Wheat	nucleus	48.95	50.78
TraesCS1D01G045100.1	Wheat	nucleus	48.8	50.62
TraesCS7A01G276800.3	Wheat	nucleus	46.25	49.28
TraesCS7D01G276800.4	Wheat	nucleus	45.65	48.64
Zm00001d031981_P002	Maize	cytosol	47.45	48.54
TraesCS7B01G174500.1	Wheat	nucleus	43.54	48.41
EES14722	Sorghum	nucleus	42.94	48.15
Os08t0224200-01	Rice	mitochondrion	43.99	47.33
Zm00001d049360_P004	Maize	extracellular	41.89	46.81
GSMUA_Achr4P04600_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	53.45	46.17
Zm00001d024339_P001	Maize	extracellular	40.99	46.11
TraesCS7B01G182100.2	Wheat	cytosol	40.69	45.78
HORVU7Hr1G069070.2	Barley	cytosol	40.54	45.76
TraesCS7A01G291700.1	Wheat	cytosol	40.24	45.42
Os04t0608800-01	Rice	nucleus	38.14	44.72
TraesCS7D01G285000.1	Wheat	endoplasmic reticulum	39.64	43.14
HORVU7Hr1G058250.46	Barley	cytosol, plastid	29.88	41.98
GSMUA_Achr1P10560_001	Banana	nucleus	27.63	41.35
KXG27074	Sorghum	cytosol	34.23	41.3
Zm00001d008913_P001	Maize	cytosol, nucleus, peroxisome	24.02	40.1
Zm00001d002372_P002	Maize	nucleus	33.18	40.04
VIT_11s0065g00160.t01	Wine grape	nucleus	42.79	38.78
VIT_06s0004g00200.t01	Wine grape	nucleus	39.19	37.02
VIT_19s0085g01100.t01	Wine grape	nucleus	30.93	34.86
VIT_08s0007g07450.t01	Wine grape	cytosol	35.29	33.86
Zm00001d047072_P001	Maize	mitochondrion	24.47	33.33
VIT_05s0020g00460.t01	Wine grape	cytosol	31.38	29.27
VIT_12s0035g00970.t01	Wine grape	plastid	26.58	25.0

Protein Annotations

EntrezGene:100249606	wikigene:100249606	MapMan:16.5.2.1	Gene3D:3.10.590.10	ProteinID:CBI18372	ProteinID:CBI18372.3
UniProt:D7SRU0	EMBL:FN594972	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR007275	EntrezGene:LOC100249606	wikigene:LOC100249606	PFAM:PF04146	PFscan:PS50882	PANTHER:PTHR12357
PANTHER:PTHR12357:SF24	TIGR:TC64070	UniParc:UPI0001BE1796	ArrayExpress:VIT_09s0054g01600	EnsemblPlantsGene:VIT_09s0054g01600	EnsemblPlants:VIT_09s0054g01600.t01
unigene:Vvi.7351	RefSeq:XP_002273579	RefSeq:XP_002273579.1	InterPro:YTH_domain	SEG:seg	:

Description

No Description!

Coordinates

chr9:-:22603746..22613636

Molecular Weight (calculated)

72773.0 Da

IEP (calculated)

5.384

GRAVY (calculated)

-0.697

Length

666 amino acids

Sequence
(BLAST)

001: MDERPVTLDP ILTGDGDDGT TDAHSTHRNN HEEKAVESDN MKEQPPTARK ERSDSSNSPQ DAASIPHPRD AVAGGDRTVY SPSVYAPQAQ AFYYGGYDNA
101: AGEWDEYPPY INAEGLEIGS PGIYNENPSL VFHAGYGYSP QMPYGPYSPV TTPLPSVGGD AQLYSPQQFP FSGPPYYQQL VPPSMPYITS PTPVSQPELT
201: SLVTVDQQGE GMLFGPRPGY PPPLGSFGRG NFPGNPGTLG FHDLQQGFDG FRSGGLWSDW PKSSDRQRSL TPLSPAVSPQ PIGTLGSFGQ NIGMASQQQR
301: SFYGFGSSSN SYNRGYLQAG FNQGSSFGSA PISSLGMNGR AWLSLDSSRR RGRGSGSLCS CNGTLDILSE QNRGPRASKP KSQITAEHGS SIDNNKHSTS
401: TAKTNDGLYN QLSFVTEYKD AKFFIIKSYS EDNVHKSIKY GVWASTPNGN RKLDAAYREA KEKQAACPVF LLFSVNASAQ FCGVAEMVGP VDFDKSVDYW
501: QQDKWSGQFP VKWHIIKDVP NSQFRHIVLE NNDNKPVTNS RDTQEVKLEQ GIEILNIFKN YETDTSILDD FDFYEDRQKA MQERKARQQA SLMVVGGNEH
601: RNAVTLSTDF IKQMSKSYAQ VVRLDDCGKD GTMPDRAGPA SDPSMGARVK LDDAMTTAAV SSAQSS

Best Arabidopsis Sequence Match ( AT3G13060.2 )
(BLAST)

001: MATTQSHTSD LTSEEQPASL DIMKEQTVPA NNETSASFKS SQEAPVVVHP AKVAPLTGPY GLAGDFAGHL PSSILSPQAQ GFYYRGYENP TGEWDEYSSY
101: VNVEGLDITS PVGFNENASL VYQTGYGYNP QMPYGPYSPA ASPLPSEGQL YSPQQFPFSG ASPYYQQVVP PSMQYITSPT QPELTSLVGV DQQGDNIGPR
201: QSYHPHPIGP FNGNQPNLGF PEWQQGFDGG IWSDWSKPSD MHRHSSSISP ALSPQPLGSY GSYGQNIPMG SQRQRSFYGF GSGSNSYNRG YMHSGGRGQG
301: SNYGSRLISN VGMGNQGWIG VDNSRGRGRV SDPSLGGAYN GTFDILNEQN RGPRASKPKT QVLEELDSAA DSKKNNKGSA KEHEESNNAD FVTDYTNAKL
401: FIIKSYSEDN VHKSIKYNVW ASTPNGNKKL DAAYREAKDE KEPCPLFLLF SVNASSQFCG VAEMVGPVDF EKSVDYWQQD KWSGQFPVKW HIIKDVPNSQ
501: FRHIILENND NKPVTNSRDT QEVKLEQGIE MLKIFKNYDA DTSILDDFGF YEEREKIIQD RKARRQPSLP SAGVVAGENE HKPASAALPT DFMKNMSKSF
601: AQVVRLDEGS KEAVKASSSP DAITTAAVSS GQSN

Arabidopsis Description

ECT5Evolutionarily conserved C-terminal region 5 [Source:UniProtKB/TrEMBL;Acc:Q0WR25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.