Factsheet for Zm00001d002372_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27074	Sorghum	cytosol	84.24	84.24
Zm00001d002008_P001	Maize	cytosol	10.14	76.71
Os04t0608800-01	Rice	nucleus	49.46	48.06
CDY51902	Canola	cytosol	13.41	47.74
Zm00001d024339_P001	Maize	extracellular	44.57	41.55
Zm00001d049360_P004	Maize	extracellular	44.2	40.94
Zm00001d008913_P001	Maize	cytosol, nucleus, peroxisome	26.27	36.34
GSMUA_Achr1P10560_001	Banana	nucleus	28.44	35.28
VIT_09s0054g01600.t01	Wine grape	nucleus	40.04	33.18
Bra039366.1-P	Field mustard	nucleus	35.69	32.78
CDY24224	Canola	nucleus	36.23	32.57
Bra034710.1-P	Field mustard	nucleus	34.96	32.49
VIT_01s0010g03690.t01	Wine grape	cytosol	33.51	32.34
CDY43378	Canola	nucleus	35.87	32.25
KRH46969	Soybean	endoplasmic reticulum, extracellular	37.32	31.84
KRH44697	Soybean	mitochondrion	37.5	31.46
Zm00001d031981_P002	Maize	cytosol	36.96	31.34
CDY23562	Canola	nucleus	35.14	31.29
CDY44025	Canola	nucleus	35.14	31.19
AT3G13060.2	Thale cress	nucleus	35.33	30.76
Zm00001d047072_P001	Maize	mitochondrion	26.63	30.06
CDX88661	Canola	nucleus	27.72	30.0
CDY58572	Canola	nucleus	27.54	29.98
Bra006780.1-P	Field mustard	cytosol	27.36	29.67
Solyc05g032850.2.1	Tomato	nucleus	32.07	29.3
CDY02802	Canola	nucleus	28.26	29.21
AT5G58190.2	Thale cress	nucleus	27.9	29.17
CDY32718	Canola	nucleus	27.9	29.11
Zm00001d034005_P003	Maize	plasma membrane	33.33	27.88
Bra020382.1-P	Field mustard	nucleus	27.9	27.85
CDX90116	Canola	nucleus	25.91	27.45
CDY67303	Canola	nucleus	25.91	27.45
Bra010911.1-P	Field mustard	nucleus	25.72	27.26
CDY11758	Canola	nucleus, plastid	26.45	26.35
AT1G27960.1	Thale cress	cytosol	25.36	25.97
VIT_11s0065g00160.t01	Wine grape	nucleus	34.06	25.58
Zm00001d038120_P001	Maize	cytosol	10.51	24.89
Zm00001d007890_P002	Maize	mitochondrion	28.99	24.5
Zm00001d011602_P001	Maize	nucleus	26.99	24.47
Zm00001d048424_P003	Maize	plastid	32.79	24.46
Zm00001d018896_P002	Maize	mitochondrion	29.17	22.8
Zm00001d027731_P012	Maize	plastid	32.79	22.54
Zm00001d032562_P001	Maize	cytosol	11.23	22.38
Zm00001d043860_P001	Maize	mitochondrion	26.45	21.63
Zm00001d051781_P001	Maize	cytosol, extracellular	9.6	21.12
Zm00001d048501_P002	Maize	cytosol	26.09	19.0
Zm00001d034996_P005	Maize	cytosol	23.01	18.46
Zm00001d010826_P001	Maize	cytosol	13.04	17.39
Zm00001d049729_P008	Maize	cytosol	22.64	17.36

Protein Annotations

EMBL:BT061831	EnsemblPlants:Zm00001d002372_P002	EnsemblPlants:Zm00001d002372_T002	EnsemblPlantsGene:Zm00001d002372	EntrezGene:100381631	Gene3D:3.10.590.10
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain
PANTHER:PTHR12357	PANTHER:PTHR12357:SF61	PFAM:PF04146	PFscan:PS50882	ProteinID:ONM14089.1	SEG:seg
UniParc:UPI0001948B10	UniProt:C0HHM5	MapMan:16.5.2.1	:	:	:

Description

evolutionarily conserved C-terminal region 10

Coordinates

chr2:-:11320826..11324747

Molecular Weight (calculated)

61341.3 Da

IEP (calculated)

6.171

GRAVY (calculated)

-0.702

Length

552 amino acids

Sequence
(BLAST)

001: MVPSEPQTVV ENKHSTSVGA EELLLTKDES TSTTVVQGAG SLMSPKGVQE EASFMGKGKG GEQQLGYQPN VYVSQPHTPF SGGYSNHLDQ WEGYPYAVSA
101: EGLDAAYPVT YGAYSPLSAI GDSHTYFSLL CPLSRPCYQP PASPNMRYSS PGTGISQFYP MHQYYSPDEV HYSVTPSFYQ PFGSFNGVPM QPSSFPGFFG
201: QGNIPLTSRM HQESMSNSGS HKAFQQGGKF GGSTQSWSTA SCKFGTFKDE KCSPDFLNEQ CRGPRATKTR KEVGSSSTED KNKNVLPIAD SDKYNHPGFV
301: TEYKDARFYV IKSYTEDHIH KSIKYNVWAS TPRGNRKLNA GYHEAKAKED HCPIFLFFSV NSSGHFCGVA EMIGPVNFDK SVDYWQNERW NGQFPVKWHI
401: VKDVPNNIVR HIILENNENK RVTNSRDTQE VKLKQGLQML AIFKNHEAQT NILEDFDFYE QREKAMLDDR QQQKPECSDT GKQVQASAPV DIVTGMSDAF
501: AQAVQLEKTN DKENKPRIED ADAADNAPAA PVKIEEDMLK TAEVGGLLKE SG

Best Arabidopsis Sequence Match ( AT1G55500.1 )
(BLAST)

001: MDSNGQVPSF DRSLSPMLPS DALDPSVFYV PNVYQQPYYY GYGSDYTGYT NSESVDMTSG YGYAAFPYSP ATSPAPQLGG DGQLYGAQQY QYPFPLTASS
101: GPFASSVPAS TQSKLSTNKA ANSASAGIPK GMNGSAPVKP LNQSALYGNS ALGGGLAAGY QDPRYSYDGF YTPVSWHDGS NFSDVQRSVS GSGVASSYSK
201: ANNNVPATRN QNSSSNSHYT SMYQPASMTG YAAQGYYDRV SPNKSYGQYG STVRSGMGYG SSGYGSRTNE RGWLNTDNKY RSRGRGNSYF YGNENIDGLN
301: ELNRGPRAKG TKATEEVSSE EVKKQTFDES NTEETVTCVL PDREECNRDD FPVEYKDAKF FIIKSYSEDD VHKSIKYNVW ASTPNGNKKL DAAYQEAQQK
401: SSGCPVFLFF SVNASGQFIG LAEMKGPVDF NKNIEYWQQD KWTGSFPLKW HILKDVPNSL LKHITLEYNE NKPVTNSRDT QEVKLEQGLK VVKIFKEHNS
501: KTCILDDFSF YEARQKTILE KKAKQQQSQK QVWEGKTNDE KPGTVDSTM

Arabidopsis Description

ECT4evolutionarily conserved C-terminal region 4 [Source:TAIR;Acc:AT1G55500]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.