Factsheet for Zm00001d043860_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014039_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79270.1	Zm00001d014039_P001	AT1G03900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011602_P001	Maize	nucleus	77.93	86.37
OQU87332	Sorghum	mitochondrion, nucleus	84.59	85.1
Os01t0679900-01	Rice	nucleus	65.63	72.74
Zm00001d002008_P001	Maize	cytosol	7.56	69.86
TraesCS3B01G301100.1	Wheat	nucleus	64.44	63.23
TraesCS3A01G267700.1	Wheat	nucleus	64.15	62.66
TraesCS3D01G267900.1	Wheat	nucleus	63.85	62.65
HORVU3Hr1G062620.8	Barley	mitochondrion	64.0	55.74
KRH43645	Soybean	nucleus	36.15	42.14
Bra035104.1-P	Field mustard	cytosol	27.41	41.76
CDY22270	Canola	cytosol	27.7	41.74
CDY56809	Canola	cytosol	27.56	41.52
Bra008406.1-P	Field mustard	cytosol	27.56	41.52
CDX88524	Canola	cytosol	27.11	41.4
KRH13810	Soybean	nucleus, plastid	35.26	41.25
CDX87395	Canola	cytosol	27.11	41.22
GSMUA_Achr9P06180_001	Banana	endoplasmic reticulum, plasma membrane	37.63	41.03
VIT_19s0085g01100.t01	Wine grape	nucleus	35.85	40.95
GSMUA_Achr6P26690_001	Banana	cytosol	36.44	40.39
Bra003615.1-P	Field mustard	nucleus	29.19	38.7
CDX68000	Canola	nucleus	29.19	38.7
CDX79309	Canola	nucleus	28.89	38.31
AT1G79270.1	Thale cress	nucleus	29.63	37.88
Zm00001d008913_P001	Maize	cytosol, nucleus, peroxisome	17.04	28.82
Zm00001d034005_P003	Maize	plasma membrane	27.41	28.03
Zm00001d049360_P004	Maize	extracellular	24.44	27.68
Zm00001d024339_P001	Maize	extracellular	24.15	27.53
Zm00001d031981_P002	Maize	cytosol	26.37	27.34
Zm00001d007890_P002	Maize	mitochondrion	25.63	26.49
Zm00001d002372_P002	Maize	nucleus	21.63	26.45
Zm00001d048424_P003	Maize	plastid	28.15	25.68
Zm00001d018896_P002	Maize	mitochondrion	26.37	25.21
Zm00001d027731_P012	Maize	plastid	29.33	24.66
Zm00001d047072_P001	Maize	mitochondrion	17.19	23.72
Zm00001d038120_P001	Maize	cytosol	7.41	21.46
Zm00001d010826_P001	Maize	cytosol	12.74	20.77
Zm00001d032562_P001	Maize	cytosol	8.3	20.22
Zm00001d034996_P005	Maize	cytosol	20.44	20.06
Zm00001d048501_P002	Maize	cytosol	22.37	19.92
Zm00001d051781_P001	Maize	cytosol, extracellular	7.11	19.12
Zm00001d049729_P008	Maize	cytosol	20.15	18.89

Protein Annotations

EnsemblPlants:Zm00001d043860_P001	EnsemblPlants:Zm00001d043860_T001	EnsemblPlantsGene:Zm00001d043860	EntrezGene:103651353	Gene3D:3.10.590.10	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357
PANTHER:PTHR12357:SF58	PFAM:PF04146	PFscan:PS50882	ProteinID:ONM39317.1	SEG:seg	UniParc:UPI0008442A94
UniProt:A0A1D6NFS5	MapMan:16.5.2.1	:	:	:	:

Description

evolutionarily conserved C-terminal region 8

Coordinates

chr3:-:212349764..212355579

Molecular Weight (calculated)

74358.3 Da

IEP (calculated)

6.702

GRAVY (calculated)

-0.630

Length

675 amino acids

Sequence
(BLAST)

001: MPNWRLVYLA LQRWTEQARL PAAPGRPSFA VELEDTRSNA GFFCGELWCG LMEPKGELAQ KPIEEAINSL EIDASTKASN VNLPAKKDAS SSDAVSCISS
101: GDAASTAKES EMNRETSFGD QGMYYYGYYY PGSYGGWDEN GYFVGYNGVE VHPAVVQTDN GSYLCHLPGY ENGYASYSQV VPGGIASVDG QYVSKEPYYS
201: TALPIQDPRT PGIFAQPIAY RTELASAYSW DPSFVLLDGV QGHPVGVHQT NYAARPKYSF NKHVIPSSKA TRSAKSAADT VKGSSSALET VTNAVNSSPP
301: SKSANKTPGA SITKGYLPYS KSVMHTNNQE KNSVYQSKGI NVKESGRSWN SREKLGRSKL NGQGDSESNE NNHTDNLKHS LSHRSDVVGL SSAGDANASI
401: PSPVAISKNA CNLSDFVTKY EQALFFVIKS YSEDDIHKSV KYNVWASTPN GNKRLDNAYR VAQERIAEKG TKCPVFLFFS VNASGQFCGV AEMVGPVDFN
501: RNMNFWQQDK WNGFFSVKWH IIKDVPNPQF RHIILENNEN KPVTNSRDTQ EVNFSQGTEM LNIFKNFTCK TSILDDFDFY ENRQKVMQDR RGKLLTTSFD
601: HPLPKAEKSP EIKSQTQLIS GPEVGRAKSD EGQGNNVGMV LDTTKKNEEQ SSNVPEILDA ACSNKEQPNK IAIEG

Best Arabidopsis Sequence Match ( AT1G79270.1 )
(BLAST)

001: MTSHVPKHPR KSFEDMVKNL KVDPLAKVTA STTSMVSAKE NKNQSEAEPS YYETLETYQG LPCPYGGYYG YYYPGLDGSV GEAKDNGYYG YGTEVQYPVM
101: QGENGSVIYL MPGFQSYDAS QTYMPINPVG VSSQALHSPM YAAQGYYQNQ FGYADVSSPT YLWDPVGDRY VYGVASYTPP LKQNISSSSH NHNNYYSKSK
201: NSFTGHGMGD RPKTPRKASQ NSYAPPPLLN QEKGRIAYPM DPVKKKSGAL NRDETEKAKA RTKENGTSMN DLANGQDHIT NGECESCSLD AEGNERSNGV
301: GSVIRRDQYN LPSFQTKYEE AIFFVIKSYS EDDIHKSIKY NVWSSTLNGN KKLDSAYQES QKKAADKSGK CPVFLFFSVN ASGQFCGVAE MIGRVDYEKS
401: MEFWQQDKWT GYFPVKWHII KDVPNPQLRH IILENNENKP VTNSRDTQEV RLPQGNEVLN IFKNYAAKTS ILDDFDFYEN REKVMVQKKL RFPPVLKKKE
501: EDLVADFKTM EMSNTVEEGN TELTGTVS

Arabidopsis Description

ECT8Evolutionarily conserved C-terminal region 8 [Source:UniProtKB/TrEMBL;Acc:Q9FPE7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.