CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH19576
KRH32201

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79270.1	KRH19576	AT1G03900.1	21798944
AT1G79270.1	KRH32201	AT1G03900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43645	Soybean	nucleus	94.8	94.47
VIT_19s0085g01100.t01	Wine grape	nucleus	58.23	56.85
KRH26322	Soybean	cytosol	12.13	54.69
Bra035104.1-P	Field mustard	cytosol	40.55	52.82
CDX87395	Canola	cytosol	40.21	52.25
CDX88524	Canola	cytosol	39.69	51.81
Bra008406.1-P	Field mustard	cytosol	39.86	51.34
CDY56809	Canola	cytosol	39.86	51.34
CDY22270	Canola	cytosol	39.34	50.67
CDX68000	Canola	nucleus	42.98	48.72
Bra003615.1-P	Field mustard	nucleus	42.63	48.33
CDX79309	Canola	nucleus	42.63	48.33
AT1G79270.1	Thale cress	nucleus	43.33	47.35
GSMUA_Achr6P26690_001	Banana	cytosol	49.91	47.29
GSMUA_Achr9P06180_001	Banana	endoplasmic reticulum, plasma membrane	50.09	46.69
Os01t0679900-01	Rice	nucleus	41.94	39.74
Zm00001d011602_P001	Maize	nucleus	41.42	39.24
KRH36908	Soybean	cytosol	29.81	38.74
OQU87332	Sorghum	mitochondrion, nucleus	41.42	35.62
Zm00001d043860_P001	Maize	mitochondrion	41.25	35.26
TraesCS3B01G301100.1	Wheat	nucleus	41.94	35.17
TraesCS3D01G267900.1	Wheat	nucleus	41.94	35.17
TraesCS3A01G267700.1	Wheat	nucleus	42.11	35.17
HORVU3Hr1G062620.8	Barley	mitochondrion	40.9	30.45
KRH44697	Soybean	mitochondrion	33.28	29.18
KRH46969	Soybean	endoplasmic reticulum, extracellular	32.41	28.9
KRH06073	Soybean	cytosol, nucleus, peroxisome	24.44	28.43
KRH59123	Soybean	nucleus	34.32	27.97
KRH43005	Soybean	nucleus	34.14	27.86
KRH02430	Soybean	cytosol	32.41	26.95
KRH50636	Soybean	cytosol	32.24	26.76
KRH06717	Soybean	nucleus	30.16	26.24
KRG94807	Soybean	nucleus	29.64	25.95
KRH70155	Soybean	nucleus	27.9	25.56
KRH11876	Soybean	endoplasmic reticulum	30.68	25.25

Protein Annotations

EMBL:ACUP02009788	EnsemblPlants:KRH13810	EnsemblPlantsGene:GLYMA_15G265400	EntrezGene:100812429	Gene3D:3.10.590.10	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357
PANTHER:PTHR12357:SF55	PFAM:PF04146	PFscan:PS50882	ProteinID:KRH13810	ProteinID:KRH13810.1	SEG:seg
UniParc:UPI000233BE7F	UniProt:I1MJF8	MapMan:16.5.2.1	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:50002441..50006353

Molecular Weight (calculated)

63715.3 Da

IEP (calculated)

7.411

GRAVY (calculated)

-0.665

Length

577 amino acids

Sequence
(BLAST)

001: MAAQLQKSAD EMRKKVHGDS STGELNNSNS VPSKGASSPS DSRSCVSSIG DASGSVKEVD VDHEYLSTDQ GVPYPAGGYY GYYYPGYGGF YGESDNQAYY
101: VGADAVDLQY PVMQADNGSY VYLVPGFQTG YPSYFPLSPA GVEGQYVGHN VYPPGSIFQQ PIGSPGYYPA SLSYGELQPS TYSWDSPLMT QDGLQGHGYN
201: ELAGKPNGRS NLSSQNHTGG VVSKSVPPPN SAEGKGLTPL LEVSSTHVKR NQPKQTNKAP VSVLHSPVVK FPTYNQGKSE FLYPNNLLNV KANTKGWVST
301: EKLKQRNKVN DSLNEQNQGP RTANAKGALM SGGNSVRGSA LVGSGNVTNK IRADQYNLPD FPTKYDHALF FVIKSYSEDD IHKSIKYNVW ASTPNGNKRL
401: DGAFQDAQKR MEEKGCKCPV FLFFSVNASG QFCGVAEMTG RVDFNKSMDF WQQDKWNGYF PVKWHIIKDV PNPQLRHIIL ENNDHKPVTS SRDTQEVSFP
501: QGVEMLNIFK NYVARTSILD DFEFYESRQK VMQEKKTRQS MPHINVQQIE ELTILGSLDL SSVKNMEDPK VVKKVND

Best Arabidopsis Sequence Match ( AT1G79270.3 )
(BLAST)

001: MVKNLKVDPL AKVTASTTSM VSAKENKNQS EAEPSYYETL ETYQGLPCPY GGYYGYYYPG LDGSVGEAKD NGYYGYGTEV QYPVMQGENG SVIYLMPGFQ
101: SYDASQTYMP INPVGVSSQA LHSPMYAAQG YYQNQFGYAD VSSPTYLWDP VGDRYVYGVA SYTPPLKQNI SSSSHNHNNY YSKSKNSFTG HGMGDRPKTP
201: RKASQNSYAP PPLLNQEKGR IAYPMDPVKK KSGALNRDET EKAKARTKEN GTSMNDLANG QDHITNGECE SCSLDAEGNE RSNGVGSVIR RDQYNLPSFQ
301: TKYEEAIFFV IKSYSEDDIH KSIKYNVWSS TLNGNKKLDS AYQESQKKAA DKSGKCPVFL FFSVNASGQF CGVAEMIGRV DYEKSMEFWQ QDKWTGYFPV
401: KWHIIKDVPN PQLRHIILEN NENKPVTNSR DTQEVRLPQG NEVLNIFKNY AAKTSILDDF DFYENREKVM VQKKLRFPPV LKKKEEDLVA DFKTMEMSNT
501: VEEGNTELTG TVS

Arabidopsis Description

ECT8Evolutionarily conserved C-terminal region 8 [Source:UniProtKB/TrEMBL;Acc:Q9FPE7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.