Factsheet for Os01t0679900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os10t0476000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79270.1	Os10t0476000-01	AT1G03900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011602_P001	Maize	nucleus	71.92	71.92
OQU87332	Sorghum	mitochondrion, nucleus	74.88	67.96
TraesCS3B01G301100.1	Wheat	nucleus	74.22	65.7
Zm00001d043860_P001	Maize	mitochondrion	72.74	65.63
TraesCS3D01G267900.1	Wheat	nucleus	73.89	65.41
TraesCS3A01G267700.1	Wheat	nucleus	73.23	64.54
HORVU3Hr1G062620.8	Barley	mitochondrion	73.73	57.94
Bra035104.1-P	Field mustard	cytosol	32.35	44.47
GSMUA_Achr9P06180_001	Banana	endoplasmic reticulum, plasma membrane	44.83	44.1
CDX88524	Canola	cytosol	31.69	43.67
GSMUA_Achr6P26690_001	Banana	cytosol	43.51	43.51
CDX87395	Canola	cytosol	31.69	43.47
CDY56809	Canola	cytosol	31.86	43.3
Bra008406.1-P	Field mustard	cytosol	31.86	43.3
VIT_19s0085g01100.t01	Wine grape	nucleus	41.87	43.15
KRH43645	Soybean	nucleus	40.56	42.66
CDY22270	Canola	cytosol	31.36	42.63
KRH13810	Soybean	nucleus, plastid	39.74	41.94
Bra003615.1-P	Field mustard	nucleus	33.83	40.47
CDX68000	Canola	nucleus	33.66	40.27
CDX79309	Canola	nucleus	33.17	39.69
AT1G79270.1	Thale cress	nucleus	34.32	39.58
Os08t0556000-01	Rice	nucleus	30.87	30.13
Os07t0170300-01	Rice	plasma membrane	29.06	29.4
Os04t0608800-01	Rice	nucleus	26.44	28.35
Os03t0748000-01	Rice	plasma membrane	29.72	27.38
Os08t0224200-01	Rice	mitochondrion	27.75	27.3
Os03t0158500-01	Rice	nucleus	31.53	27.16
Os03t0317000-01	Rice	plasma membrane	30.87	26.52
Os05t0105600-01	Rice	cytosol	26.6	25.39
Os04t0129300-01	Rice	nucleus	27.09	24.44
Os01t0329800-01	Rice	cytosol	24.63	21.19

Protein Annotations

MapMan:16.5.2.1	Gene3D:3.10.590.10	EntrezGene:4325283	EMBL:AK120262	ProteinID:BAD73483.1	ProteinID:BAF05783.1
ProteinID:BAS73691.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488
InterPro:IPR007275	EnsemblPlantsGene:Os01g0679900	EnsemblPlants:Os01t0679900-01	PFAM:PF04146	PFscan:PS50882	PANTHER:PTHR12357
PANTHER:PTHR12357:SF58	UniProt:Q5QM96	UniParc:UPI000048DFAA	RefSeq:XP_015647127.1	InterPro:YTH_domain	SEG:seg

Description

Similar to Ythdf2-prov protein. (Os01t0679900-01);Similar to predicted protein. (Os01t0679900-02);Conserved hypothetical protein. (Os01t0679900-03)

Coordinates

chr1:+:27983688..27990347

Molecular Weight (calculated)

67074.9 Da

IEP (calculated)

5.730

GRAVY (calculated)

-0.661

Length

609 amino acids

Sequence
(BLAST)

001: MEPKGEQQRH SMQEAMENLK INGSTKTSNV NLPATKGASS SDAISCISSG DAASTVKESE MNQEASVGDQ GMYYYGYYYP ASFGGYDENG YFVGYNGLEV
101: HPTVVQGDNG SYLCYLPGYE NGYTYSPIVP GVIAGVDGQY ISKEPYYSTI SMQDPSTPGI FAQPVAYGPE LVPAYTWDPS FALLDGVQGR PVGVHQTNYP
201: ARPKYSSNKL PSSKASRNTK SASDTIKGSS SALDTMSTSA NGYPSSKTAN KASGASISKG YPLSSKFAVH TNQGKDNLYQ SKDIGMKESG RSWNSTEKLK
301: ARSKLNGYGD CDISDNLTDN SKNSLSPQGG HYGLSSAGGG NDVTPSPVAM SRDAYNLPDF VTKYDQALFF VIKSYSEDDI HKSIKYNVWA STPNGNKRLD
401: NAFKLAQERV AEKGTKCPMF LFFSVNASGQ FCGVAEMVGP VDFNRNMNFW QQDKWNGFFP VKWHIIKDVP NPQFRHIILE NNENKPVTNS RDTQEVKFPQ
501: GSEMLNIFKN FSCKTSILDD FDFYENRQKV MQDRRGKPLA TTLDHPMLKV EKPEETKRPS QFVSTVDLDT AKPDEVVFDK IATELDTAKL SEEQINKVEV
601: EIGTTNSSE

Best Arabidopsis Sequence Match ( AT1G79270.1 )
(BLAST)

001: MTSHVPKHPR KSFEDMVKNL KVDPLAKVTA STTSMVSAKE NKNQSEAEPS YYETLETYQG LPCPYGGYYG YYYPGLDGSV GEAKDNGYYG YGTEVQYPVM
101: QGENGSVIYL MPGFQSYDAS QTYMPINPVG VSSQALHSPM YAAQGYYQNQ FGYADVSSPT YLWDPVGDRY VYGVASYTPP LKQNISSSSH NHNNYYSKSK
201: NSFTGHGMGD RPKTPRKASQ NSYAPPPLLN QEKGRIAYPM DPVKKKSGAL NRDETEKAKA RTKENGTSMN DLANGQDHIT NGECESCSLD AEGNERSNGV
301: GSVIRRDQYN LPSFQTKYEE AIFFVIKSYS EDDIHKSIKY NVWSSTLNGN KKLDSAYQES QKKAADKSGK CPVFLFFSVN ASGQFCGVAE MIGRVDYEKS
401: MEFWQQDKWT GYFPVKWHII KDVPNPQLRH IILENNENKP VTNSRDTQEV RLPQGNEVLN IFKNYAAKTS ILDDFDFYEN REKVMVQKKL RFPPVLKKKE
501: EDLVADFKTM EMSNTVEEGN TELTGTVS

Arabidopsis Description

ECT8Evolutionarily conserved C-terminal region 8 [Source:UniProtKB/TrEMBL;Acc:Q9FPE7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.