CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86664
CDX89856
CDY15480

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79270.1	CDX86664	AT1G03900.1	21798944
AT1G79270.1	CDX89856	AT1G03900.1	21798944
AT1G79270.1	CDY15480	AT1G03900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008406.1-P	Field mustard	cytosol	98.44	98.44
CDY22270	Canola	cytosol	95.98	95.98
CDX87395	Canola	cytosol	83.93	84.68
CDX88524	Canola	cytosol	82.59	83.71
CDX68000	Canola	nucleus	87.28	76.82
CDX79309	Canola	nucleus	85.27	75.05
AT1G79270.1	Thale cress	nucleus	85.49	72.54
CDY51902	Canola	cytosol	15.85	45.81
CDY57677	Canola	mitochondrion	17.41	45.61
CDY50448	Canola	cytosol	22.99	40.39
KRH43645	Soybean	nucleus	52.01	40.24
KRH13810	Soybean	nucleus, plastid	51.34	39.86
VIT_19s0085g01100.t01	Wine grape	nucleus	52.23	39.59
CDX91541	Canola	mitochondrion	13.62	37.42
GSMUA_Achr9P06180_001	Banana	endoplasmic reticulum, plasma membrane	47.77	34.57
GSMUA_Achr6P26690_001	Banana	cytosol	45.31	33.33
CDY69959	Canola	nucleus	29.24	32.83
CDY50867	Canola	nucleus	29.24	32.75
CDY42891	Canola	nucleus	29.24	32.75
Os01t0679900-01	Rice	nucleus	43.3	31.86
CDY05744	Canola	cytosol	8.93	31.75
CDY07437	Canola	nucleus	29.69	31.59
Zm00001d011602_P001	Maize	nucleus	42.86	31.53
CDY52966	Canola	cytosol	31.25	31.25
CDY29972	Canola	nucleus	28.57	31.22
CDY21154	Canola	nucleus	28.35	31.2
CDY39299	Canola	nucleus	29.24	30.97
CDY56132	Canola	nucleus	30.8	30.87
CDY24182	Canola	nucleus	36.16	29.94
TraesCS3B01G301100.1	Wheat	nucleus	44.87	29.22
TraesCS3D01G267900.1	Wheat	nucleus	44.64	29.07
TraesCS3A01G267700.1	Wheat	nucleus	43.75	28.36
OQU87332	Sorghum	mitochondrion, nucleus	42.41	28.32
CDY58572	Canola	nucleus	31.25	27.61
Zm00001d043860_P001	Maize	mitochondrion	41.52	27.56
CDX88661	Canola	nucleus	31.25	27.45
CDX94944	Canola	nucleus	29.91	26.96
CDX93476	Canola	nucleus	29.69	26.6
CDY02802	Canola	nucleus	31.7	26.59
CDY23602	Canola	nucleus	36.16	25.96
CDY07089	Canola	nucleus	36.83	25.94
CDY32718	Canola	nucleus	30.58	25.9
CDY23562	Canola	nucleus	35.71	25.81
CDY24224	Canola	nucleus	35.27	25.73
CDY43378	Canola	nucleus	35.04	25.57
CDY44025	Canola	nucleus	35.49	25.56
CDY43989	Canola	nucleus	36.16	25.55
CDY43306	Canola	cytosol	34.82	25.45
CDX82538	Canola	nucleus	35.94	25.16
HORVU3Hr1G062620.8	Barley	mitochondrion	43.3	25.03
CDX75712	Canola	nucleus	35.27	24.92
CDX93645	Canola	nucleus	33.93	24.84
CDX90116	Canola	nucleus	28.79	24.76
CDY67303	Canola	nucleus	28.79	24.76
CDY11758	Canola	nucleus, plastid	28.12	22.74
CDY60520	Canola	cytosol	6.25	21.21

Protein Annotations

EnsemblPlants:CDY56809	EnsemblPlantsGene:GSBRNA2T00020100001	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF55	PFAM:PF04146
PFscan:PS50882	ProteinID:CDY56809	ProteinID:CDY56809.1	SEG:seg	UniParc:UPI0004EDD74D	UniProt:A0A078J0X3
MapMan:16.5.2.1	:	:	:	:	:

Description

BnaA02g36210DBnaA02g36210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0X3]

Coordinates

chrLK033519:-:49744..53104

Molecular Weight (calculated)

50944.5 Da

IEP (calculated)

6.522

GRAVY (calculated)

-0.750

Length

448 amino acids

Sequence
(BLAST)

001: MVKSLKVDPL AKVTASTTSM KSPSEPYYEI LETYQGLPCP YGGYYGFYYP GLDGSVGEAK DNGYYGYGTE VQYPVMQGED GSLMYMMPGF QSYDASPTYM
101: PITTGSVSSQ ALRSPMYAAQ GYYQNQYGYG DVSSPNYLWD PIGDKYVYGV ASSNQPLKHN TSSSSHNHSS YYPKSKTSYG MGDRPKTPRK NSYAPLPIHN
201: ETEKVKARNK DNVNSTEGEC ESCVGYVIKR DQYNLPSFQT KYEEAMFFVI KSYSEDDIHK SIKYNVWSST LNGNKKLDSA YQESQKKVAE KGGTCPVFLF
301: FSVNASGQFC GVAEMTGRVD YEKSMEFWQQ DKWTGYFPVK WHIIKDVPNP QLRHVILENN ESKPVTNSRD TQEVRLPQGN EVLDIFKNYA AKTSILDDFD
401: FYENREKVLV QKKLRLHPVQ IKKKEEADLV ADFKSMEISN TFKEETQT

Best Arabidopsis Sequence Match ( AT1G79270.1 )
(BLAST)

001: MTSHVPKHPR KSFEDMVKNL KVDPLAKVTA STTSMVSAKE NKNQSEAEPS YYETLETYQG LPCPYGGYYG YYYPGLDGSV GEAKDNGYYG YGTEVQYPVM
101: QGENGSVIYL MPGFQSYDAS QTYMPINPVG VSSQALHSPM YAAQGYYQNQ FGYADVSSPT YLWDPVGDRY VYGVASYTPP LKQNISSSSH NHNNYYSKSK
201: NSFTGHGMGD RPKTPRKASQ NSYAPPPLLN QEKGRIAYPM DPVKKKSGAL NRDETEKAKA RTKENGTSMN DLANGQDHIT NGECESCSLD AEGNERSNGV
301: GSVIRRDQYN LPSFQTKYEE AIFFVIKSYS EDDIHKSIKY NVWSSTLNGN KKLDSAYQES QKKAADKSGK CPVFLFFSVN ASGQFCGVAE MIGRVDYEKS
401: MEFWQQDKWT GYFPVKWHII KDVPNPQLRH IILENNENKP VTNSRDTQEV RLPQGNEVLN IFKNYAAKTS ILDDFDFYEN REKVMVQKKL RFPPVLKKKE
501: EDLVADFKTM EMSNTVEEGN TELTGTVS

Arabidopsis Description

ECT8Evolutionarily conserved C-terminal region 8 [Source:UniProtKB/TrEMBL;Acc:Q9FPE7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.