Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13460.1 | CDX75921 | AT3G17510.1 | 16113215 |
| AT3G13460.1 | CDX82366 | AT3G17510.1 | 16113215 |
| AT3G13460.1 | CDX92136 | AT3G17510.1 | 16113215 |
| AT3G13460.1 | CDX95849 | AT3G17510.1 | 16113215 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43989 | Canola | nucleus | 96.63 | 95.11 |
| Bra027432.1-P | Field mustard | nucleus | 95.35 | 93.85 |
| CDX82538 | Canola | nucleus | 84.29 | 82.19 |
| CDX75712 | Canola | nucleus | 82.37 | 81.07 |
| CDY07089 | Canola | nucleus | 82.53 | 80.97 |
| CDY24182 | Canola | nucleus | 69.71 | 80.41 |
| AT3G13460.1 | Thale cress | cytosol | 83.65 | 78.26 |
| CDY57677 | Canola | mitochondrion | 14.74 | 53.8 |
| VIT_06s0004g00200.t01 | Wine grape | nucleus | 60.1 | 53.19 |
| KRH43005 | Soybean | nucleus | 58.65 | 51.77 |
| KRH59123 | Soybean | nucleus | 58.01 | 51.13 |
| CDY05744 | Canola | cytosol | 10.1 | 50.0 |
| Solyc01g028860.2.1 | Tomato | nucleus | 55.93 | 49.43 |
| CDY07437 | Canola | nucleus | 33.33 | 49.41 |
| CDY69959 | Canola | nucleus | 31.09 | 48.62 |
| CDY50448 | Canola | cytosol | 19.71 | 48.24 |
| CDY39299 | Canola | nucleus | 32.69 | 48.23 |
| CDY50867 | Canola | nucleus | 30.77 | 48.0 |
| CDY42891 | Canola | nucleus | 30.77 | 48.0 |
| CDY29972 | Canola | nucleus | 31.09 | 47.32 |
| PGSC0003DMT400061684 | Potato | endoplasmic reticulum, plasma membrane | 55.77 | 47.28 |
| CDY21154 | Canola | nucleus | 30.77 | 47.17 |
| CDY56132 | Canola | nucleus | 33.49 | 46.76 |
| GSMUA_Achr7P01490_001 | Banana | nucleus | 41.51 | 46.25 |
| CDY52966 | Canola | cytosol | 33.17 | 46.21 |
| GSMUA_Achr7P27220_001 | Banana | cytosol | 48.4 | 45.69 |
| CDY51902 | Canola | cytosol | 11.22 | 45.16 |
| GSMUA_Achr4P22630_001 | Banana | nucleus | 44.87 | 45.09 |
| CDX91541 | Canola | mitochondrion | 11.7 | 44.79 |
| GSMUA_Achr4P21380_001 | Banana | nucleus | 46.96 | 44.53 |
| GSMUA_Achr4P14820_001 | Banana | cytosol | 23.56 | 44.41 |
| GSMUA_Achr5P02830_001 | Banana | cytosol | 43.75 | 44.32 |
| GSMUA_Achr4P28430_001 | Banana | nucleus, plastid | 43.43 | 44.06 |
| Os03t0158500-01 | Rice | nucleus | 49.04 | 43.28 |
| KXG40139 | Sorghum | plastid | 49.04 | 43.04 |
| EER93461 | Sorghum | nucleus | 45.35 | 42.94 |
| Os03t0748000-01 | Rice | plasma membrane | 45.19 | 42.66 |
| Zm00001d034005_P003 | Maize | plasma membrane | 44.55 | 42.12 |
| TraesCS5B01G391500.1 | Wheat | nucleus | 43.91 | 41.39 |
| TraesCS5D01G396400.3 | Wheat | nucleus | 43.75 | 41.24 |
| TraesCS4D01G273200.4 | Wheat | cytosol | 47.76 | 41.22 |
| HORVU5Hr1G094950.6 | Barley | cytosol, nucleus | 43.75 | 41.05 |
| TraesCS5A01G386600.2 | Wheat | nucleus | 43.59 | 41.03 |
| TraesCS4A01G031600.2 | Wheat | cytosol | 47.6 | 40.74 |
| HORVU4Hr1G072940.4 | Barley | cytosol | 47.76 | 40.16 |
| TraesCS5A01G431200.1 | Wheat | nucleus | 37.82 | 40.07 |
| TraesCS5D01G439100.1 | Wheat | nucleus | 37.5 | 39.8 |
| Zm00001d048424_P003 | Maize | plastid | 46.96 | 39.59 |
| TraesCS5B01G433000.1 | Wheat | cytosol | 37.66 | 39.43 |
| EER93313 | Sorghum | cytosol | 35.9 | 39.16 |
| KXG34475 | Sorghum | cytosol | 40.38 | 39.01 |
| TraesCS4B01G274500.2 | Wheat | plastid | 47.6 | 38.72 |
| Os07t0170300-01 | Rice | plasma membrane | 37.34 | 38.7 |
| Zm00001d027731_P012 | Maize | plastid | 48.24 | 37.48 |
| CDX87395 | Canola | cytosol | 26.12 | 36.71 |
| Zm00001d007890_P002 | Maize | mitochondrion | 38.3 | 36.6 |
| TraesCS5A01G431100.1 | Wheat | cytosol | 37.5 | 36.45 |
| CDX88524 | Canola | cytosol | 25.8 | 36.43 |
| CDY22270 | Canola | cytosol | 26.12 | 36.38 |
| CDY60520 | Canola | cytosol | 7.69 | 36.36 |
| CDY56809 | Canola | cytosol | 25.96 | 36.16 |
| TraesCS5B01G432900.2 | Wheat | extracellular | 37.5 | 36.11 |
| TraesCS5D01G439200.1 | Wheat | cytosol | 37.02 | 35.98 |
| CDY23562 | Canola | nucleus | 35.74 | 35.97 |
| CDY44025 | Canola | nucleus | 35.58 | 35.69 |
| Zm00001d018896_P002 | Maize | mitochondrion | 39.9 | 35.27 |
| HORVU5Hr1G104380.1 | Barley | plastid | 37.18 | 35.1 |
| CDY43378 | Canola | nucleus | 34.29 | 34.85 |
| CDY24224 | Canola | nucleus | 33.81 | 34.36 |
| HORVU5Hr1G104390.3 | Barley | plastid | 36.86 | 33.43 |
| CDX94944 | Canola | nucleus | 26.6 | 33.4 |
| CDX68000 | Canola | nucleus | 26.76 | 32.81 |
| CDX79309 | Canola | nucleus | 26.76 | 32.81 |
| CDX93476 | Canola | nucleus | 26.28 | 32.8 |
| CDY67303 | Canola | nucleus | 26.28 | 31.48 |
| CDX90116 | Canola | nucleus | 26.28 | 31.48 |
| CDY02802 | Canola | nucleus | 26.76 | 31.27 |
| CDY58572 | Canola | nucleus | 25.32 | 31.16 |
| CDX88661 | Canola | nucleus | 25.32 | 30.98 |
| CDY32718 | Canola | nucleus | 25.8 | 30.43 |
| CDY43306 | Canola | cytosol | 29.49 | 30.02 |
| CDX93645 | Canola | nucleus | 28.69 | 29.25 |
| CDY11758 | Canola | nucleus, plastid | 25.8 | 29.06 |
Protein Annotations
| EnsemblPlants:CDY23602 | EnsemblPlantsGene:GSBRNA2T00023813001 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | ncoils:Coil | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF63 |
| PFAM:PF04146 | PFscan:PS50882 | ProteinID:CDY23602 | ProteinID:CDY23602.1 | SEG:seg | UniParc:UPI0004EF0D95 |
| UniProt:A0A078GET6 | MapMan:16.5.2.1 | : | : | : | : |
Description
BnaC05g39920DBnaC05g39920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GET6]
Coordinates
chrLK032145:-:331766..335381
Molecular Weight (calculated)
67917.4 Da
IEP (calculated)
6.436
GRAVY (calculated)
-0.853
Length
624 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQNLTLDSQ TKASEIPEPN KKTAVYQYGG VDSHGQVPTY DRSLTPLLPT DAVDPSVCYV PNAYPHFYYG GYGNGDWSEY TGYQNPEGVD MSSGIYGENG
101: SIVYPQSYGY AAYPYSPATS PGPQVGGDGQ LYAAQQQYQY PAFFPTGAFA TPTQGDLSAN KAGGVKTAET KNVASAAGKG SNGTVTGKPN NQTTHNTASN
201: LYGTGAPGGG FAGGYGYDGF YAPVPCYDGS KYSDVQRSGS GVASSYSKST TVPSSRNQNY RSNSHYTPAS MTGYGTGQGY YNRVYQNKVY GSYGSSGRSG
301: TVYGSSGYDS RTNGRGWVST TDNRYRNWGR GNNSFYGNEN NADGLNELNR GPRAKGAKNQ KENSEDSLEV KEQTGESNNT CIVPDREQYN KEDFPVDYEN
401: AMFFVIKSYS EDDVHKSIKY NVWASTPNGN KKLAAAYQEA QQKPGGCPIF LFFSVNASGQ FVGLAEMTGP VDFNTNVEYW QQDKWTGSFP LKWHIVKDVP
501: NSLLKHITLE NNENKPVTNS RDTQEVKLEQ GLKIVKIFKE HTSKTCILDD FSFYEVRQKT ILEKKAKQQQ TQKHVSEEKT TTDEKKDSAT ADSANKESPP
601: ATSDAKADEN GSVAKPVGVV ANGC
101: SIVYPQSYGY AAYPYSPATS PGPQVGGDGQ LYAAQQQYQY PAFFPTGAFA TPTQGDLSAN KAGGVKTAET KNVASAAGKG SNGTVTGKPN NQTTHNTASN
201: LYGTGAPGGG FAGGYGYDGF YAPVPCYDGS KYSDVQRSGS GVASSYSKST TVPSSRNQNY RSNSHYTPAS MTGYGTGQGY YNRVYQNKVY GSYGSSGRSG
301: TVYGSSGYDS RTNGRGWVST TDNRYRNWGR GNNSFYGNEN NADGLNELNR GPRAKGAKNQ KENSEDSLEV KEQTGESNNT CIVPDREQYN KEDFPVDYEN
401: AMFFVIKSYS EDDVHKSIKY NVWASTPNGN KKLAAAYQEA QQKPGGCPIF LFFSVNASGQ FVGLAEMTGP VDFNTNVEYW QQDKWTGSFP LKWHIVKDVP
501: NSLLKHITLE NNENKPVTNS RDTQEVKLEQ GLKIVKIFKE HTSKTCILDD FSFYEVRQKT ILEKKAKQQQ TQKHVSEEKT TTDEKKDSAT ADSANKESPP
601: ATSDAKADEN GSVAKPVGVV ANGC
001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC
Arabidopsis Description
ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.