Factsheet for HORVU5Hr1G104390.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, vacuole
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G017240.4
HORVU1Hr1G017380.4
HORVU2Hr1G027080.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13460.1	HORVU1Hr1G017240.4	AT3G17510.1	16113215
AT3G13460.1	HORVU1Hr1G017380.4	AT3G17510.1	16113215
AT3G13460.1	HORVU2Hr1G027080.5	AT3G17510.1	16113215

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G439200.1	Wheat	cytosol	85.47	91.59
TraesCS5A01G431100.1	Wheat	cytosol	85.17	91.28
TraesCS5B01G432900.2	Wheat	extracellular	84.74	89.97
EER93313	Sorghum	cytosol	53.05	63.81
Os07t0170300-01	Rice	plasma membrane	48.11	54.98
HORVU5Hr1G104380.1	Barley	plastid	52.62	54.77
CDY57677	Canola	mitochondrion	12.79	51.46
Zm00001d007890_P002	Maize	mitochondrion	44.19	46.55
Bra004105.1-P	Field mustard	nucleus	26.16	45.45
Zm00001d018896_P002	Maize	mitochondrion	46.22	45.04
CDY07437	Canola	nucleus	27.03	44.18
CDY50448	Canola	cytosol	16.13	43.53
CDY39299	Canola	nucleus	26.74	43.5
Bra008509.1-P	Field mustard	cytosol	26.6	43.26
CDY56132	Canola	nucleus	27.18	41.83
CDY52966	Canola	cytosol	27.03	41.52
CDX91541	Canola	mitochondrion	9.45	39.88
CDY21154	Canola	nucleus	23.26	39.31
Bra036423.1-P	Field mustard	nucleus	23.11	39.16
AT5G61020.1	Thale cress	cytosol	28.05	38.99
Bra031960.1-P	Field mustard	nucleus	22.38	38.89
CDY69959	Canola	nucleus	22.53	38.85
CDY50867	Canola	nucleus	22.38	38.5
CDY42891	Canola	nucleus	22.38	38.5
AT3G03950.3	Thale cress	cytosol	23.84	38.32
CDY29972	Canola	nucleus	22.82	38.29
AT1G55500.5	Thale cress	cytosol	33.28	37.85
VIT_06s0004g00200.t01	Wine grape	nucleus	37.79	36.88
CDY23602	Canola	nucleus	33.43	36.86
VIT_08s0007g07450.t01	Wine grape	cytosol	37.06	36.74
CDY43989	Canola	nucleus	33.72	36.59
Bra027432.1-P	Field mustard	nucleus	33.58	36.44
CDX75712	Canola	nucleus	33.43	36.28
HORVU5Hr1G094950.6	Barley	cytosol, nucleus	35.03	36.24
CDX82538	Canola	nucleus	33.58	36.09
AT3G13460.1	Thale cress	cytosol	34.88	35.98
Bra001506.1-P	Field mustard	nucleus	32.99	35.52
KRH59123	Soybean	nucleus	36.34	35.31
Solyc01g028860.2.1	Tomato	nucleus	36.19	35.27
KRH43005	Soybean	nucleus	36.19	35.22
CDY24182	Canola	nucleus	27.62	35.12
Bra039400.1-P	Field mustard	nucleus	32.41	35.06
CDY07089	Canola	nucleus	32.41	35.06
Bra018951.1-P	Field mustard	cytosol	13.08	34.75
Bra014253.1-P	Field mustard	cytosol	14.97	34.56
Bra038524.1-P	Field mustard	cytosol	11.19	34.22
KRG94807	Soybean	nucleus	32.56	33.99
PGSC0003DMT400061684	Potato	endoplasmic reticulum, plasma membrane	35.9	33.56
KRH06717	Soybean	nucleus	31.54	32.73
KRH70155	Soybean	nucleus	29.65	32.38
HORVU4Hr1G072940.4	Barley	cytosol	34.88	32.34
HORVU1Hr1G008330.2	Barley	nucleus	27.62	29.59
HORVU7Hr1G069070.2	Barley	cytosol	25.0	29.15
HORVU7Hr1G058250.46	Barley	cytosol, plastid	16.57	24.05
HORVU4Hr1G052390.3	Barley	golgi	25.29	23.2
HORVU2Hr1G023660.2	Barley	nucleus	23.26	22.57
HORVU3Hr1G062620.8	Barley	mitochondrion	25.29	22.45
HORVU3Hr1G045890.2	Barley	endoplasmic reticulum, peroxisome, plasma membrane	21.08	22.17
HORVU2Hr1G001810.8	Barley	cytosol	22.53	19.67

Protein Annotations

EnsemblPlants:HORVU5Hr1G104390.3	EnsemblPlantsGene:HORVU5Hr1G104390	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF34	PFAM:PF04146
PFscan:PS50882	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI000B47429E	UniProt:A0A287SK47	MapMan:16.5.2.1

Description

No Description!

Coordinates

chrchr5H:+:619078719..619083110

Molecular Weight (calculated)

75016.6 Da

IEP (calculated)

9.301

GRAVY (calculated)

-0.692

Length

688 amino acids

Sequence
(BLAST)

001: PLVSLFFLFS HVAAPPLLQP HPTPHPPRGF LWVLSPRAAP RPAGPPPWPP PPTTPRICCA SCRWIPRASS PARAKRRRTR VSAAPNGRLN GVVASPSPQV
101: SSAGQWPAMG QQDYKNANMY GAGADAYQYY YGGWGDYSVY VGLDGAEPLN PGVYGDMYCY PQYGVASSGY DGQQMYGSQH YQYPSTYHQP QTTSTTKPAY
201: KPNAGKSDPL PQKDASAAPA AYQQPGLLVA SKANSNSTDS STGLKKTTYP VKPSGRSASY QNHGDKAAYP SYGGHTQQKL SVGNSTSTAS NPKTKGLLGQ
301: NLAMGPQTPG YMSSMYSSVM YNANAYGPDY WYGSHLYGSG MYGGWNVPSD GKYKSRGNTY GSHRFGNENI DGLNELKRGP RSTVIKNEQG AGEAAVAPAK
401: GQELPTGDAS NTVVQDQYNK ADFVETYSDA KFFIIKSYSE DDVHKSIKYN VWASTPSGNK RLDAAYQAAK DKSSNSPIFL LFSVNTSGQF IGLAEMVGQV
501: DFNKTVEYWQ QDKWTGCFPV KWHIVKDIPN TLLKHIILEY NENKPVTNSR DTQEVRLEQG LQVLKIFKDH VCKTSMLDDF GFYDNREKIM QEKKSKRQQQ
601: PLEKIMSKKP LSINNTENQD VDEKQGIMNK KPLSTSNTEN QDADAKQGLQ ELKVLGEKNP VVENGVAAGA VNGVAPTDAS PAAAAVGC

Best Arabidopsis Sequence Match ( AT3G13460.1 )
(BLAST)

001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC

Arabidopsis Description

ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.