Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13460.1 | CDX75921 | AT3G17510.1 | 16113215 |
| AT3G13460.1 | CDX82366 | AT3G17510.1 | 16113215 |
| AT3G13460.1 | CDX92136 | AT3G17510.1 | 16113215 |
| AT3G13460.1 | CDX95849 | AT3G17510.1 | 16113215 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY07089 | Canola | nucleus | 95.93 | 81.6 |
| CDY23602 | Canola | nucleus | 80.41 | 69.71 |
| CDX82538 | Canola | nucleus | 81.89 | 69.22 |
| CDY43989 | Canola | nucleus | 80.78 | 68.93 |
| CDX75712 | Canola | nucleus | 79.3 | 67.67 |
| AT3G13460.1 | Thale cress | cytosol | 80.59 | 65.37 |
| CDY57677 | Canola | mitochondrion | 16.82 | 53.22 |
| CDY50448 | Canola | cytosol | 23.11 | 49.02 |
| CDX91541 | Canola | mitochondrion | 13.86 | 46.01 |
| VIT_06s0004g00200.t01 | Wine grape | nucleus | 59.52 | 45.67 |
| KRH43005 | Soybean | nucleus | 58.41 | 44.7 |
| KRH59123 | Soybean | nucleus | 57.49 | 43.93 |
| Solyc01g028860.2.1 | Tomato | nucleus | 55.08 | 42.21 |
| CDY07437 | Canola | nucleus | 32.72 | 42.04 |
| GSMUA_Achr4P14820_001 | Banana | cytosol | 25.69 | 41.99 |
| CDY39299 | Canola | nucleus | 32.16 | 41.13 |
| CDY51902 | Canola | cytosol | 11.65 | 40.65 |
| PGSC0003DMT400061684 | Potato | endoplasmic reticulum, plasma membrane | 55.27 | 40.62 |
| GSMUA_Achr7P01490_001 | Banana | nucleus | 41.4 | 40.0 |
| CDY56132 | Canola | nucleus | 32.72 | 39.6 |
| GSMUA_Achr4P22630_001 | Banana | nucleus | 45.29 | 39.45 |
| CDY52966 | Canola | cytosol | 32.53 | 39.29 |
| CDY05744 | Canola | cytosol | 9.06 | 38.89 |
| GSMUA_Achr7P27220_001 | Banana | cytosol | 47.5 | 38.88 |
| GSMUA_Achr4P28430_001 | Banana | nucleus, plastid | 43.62 | 38.37 |
| GSMUA_Achr4P21380_001 | Banana | nucleus | 46.58 | 38.3 |
| CDY69959 | Canola | nucleus | 28.1 | 38.1 |
| CDY21154 | Canola | nucleus | 28.65 | 38.08 |
| EER93461 | Sorghum | nucleus | 46.21 | 37.94 |
| CDY29972 | Canola | nucleus | 28.65 | 37.8 |
| GSMUA_Achr5P02830_001 | Banana | cytosol | 42.88 | 37.66 |
| CDY42891 | Canola | nucleus | 27.73 | 37.5 |
| CDY50867 | Canola | nucleus | 27.73 | 37.5 |
| Zm00001d034005_P003 | Maize | plasma membrane | 45.1 | 36.97 |
| Os03t0748000-01 | Rice | plasma membrane | 44.73 | 36.61 |
| TraesCS5D01G396400.3 | Wheat | nucleus | 44.55 | 36.4 |
| TraesCS5B01G391500.1 | Wheat | nucleus | 44.55 | 36.4 |
| TraesCS5A01G386600.2 | Wheat | nucleus | 44.36 | 36.2 |
| CDY56809 | Canola | cytosol | 29.94 | 36.16 |
| HORVU5Hr1G094950.6 | Barley | cytosol, nucleus | 44.18 | 35.94 |
| CDY22270 | Canola | cytosol | 29.76 | 35.94 |
| CDX87395 | Canola | cytosol | 29.39 | 35.81 |
| KXG40139 | Sorghum | plastid | 46.77 | 35.58 |
| CDX88524 | Canola | cytosol | 29.02 | 35.52 |
| Os03t0158500-01 | Rice | nucleus | 45.84 | 35.08 |
| EER93313 | Sorghum | cytosol | 36.23 | 34.27 |
| TraesCS5A01G431200.1 | Wheat | nucleus | 37.15 | 34.13 |
| TraesCS5D01G439100.1 | Wheat | nucleus | 36.97 | 34.01 |
| TraesCS5B01G433000.1 | Wheat | cytosol | 37.15 | 33.72 |
| CDX79309 | Canola | nucleus | 31.24 | 33.2 |
| CDX68000 | Canola | nucleus | 31.05 | 33.01 |
| TraesCS4D01G273200.4 | Wheat | cytosol | 43.81 | 32.78 |
| KXG34475 | Sorghum | cytosol | 39.0 | 32.66 |
| HORVU4Hr1G072940.4 | Barley | cytosol | 44.55 | 32.48 |
| TraesCS4A01G031600.2 | Wheat | cytosol | 43.62 | 32.37 |
| Zm00001d048424_P003 | Maize | plastid | 43.99 | 32.16 |
| Os07t0170300-01 | Rice | plasma membrane | 35.49 | 31.89 |
| TraesCS4B01G274500.2 | Wheat | plastid | 44.92 | 31.68 |
| TraesCS5A01G431100.1 | Wheat | cytosol | 36.78 | 31.0 |
| TraesCS5B01G432900.2 | Wheat | extracellular | 36.78 | 30.71 |
| TraesCS5D01G439200.1 | Wheat | cytosol | 36.41 | 30.69 |
| Zm00001d007890_P002 | Maize | mitochondrion | 36.97 | 30.63 |
| Zm00001d027731_P012 | Maize | plastid | 45.1 | 30.39 |
| HORVU5Hr1G104380.1 | Barley | plastid | 36.97 | 30.26 |
| CDY44025 | Canola | nucleus | 34.38 | 29.9 |
| CDY23562 | Canola | nucleus | 34.2 | 29.84 |
| CDY24224 | Canola | nucleus | 33.83 | 29.8 |
| CDY43378 | Canola | nucleus | 33.83 | 29.8 |
| Zm00001d018896_P002 | Maize | mitochondrion | 38.45 | 29.46 |
| CDX94944 | Canola | nucleus | 26.25 | 28.57 |
| CDY43306 | Canola | cytosol | 32.35 | 28.55 |
| CDX88661 | Canola | nucleus | 26.43 | 28.04 |
| CDY60520 | Canola | cytosol | 6.84 | 28.03 |
| CDY58572 | Canola | nucleus | 26.06 | 27.81 |
| CDX93476 | Canola | nucleus | 25.69 | 27.8 |
| CDY02802 | Canola | nucleus | 27.36 | 27.72 |
| HORVU5Hr1G104390.3 | Barley | plastid | 35.12 | 27.62 |
| CDY32718 | Canola | nucleus | 26.8 | 27.41 |
| CDX93645 | Canola | nucleus | 30.87 | 27.29 |
| CDY67303 | Canola | nucleus | 25.69 | 26.68 |
| CDX90116 | Canola | nucleus | 25.69 | 26.68 |
| CDY11758 | Canola | nucleus, plastid | 25.32 | 24.73 |
Protein Annotations
| EnsemblPlants:CDY24182 | EnsemblPlantsGene:GSBRNA2T00026265001 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF63 | PFAM:PF04146 |
| PFscan:PS50882 | ProteinID:CDY24182 | ProteinID:CDY24182.1 | SEG:seg | UniParc:UPI0004EDFDB9 | UniProt:A0A078GGA7 |
| MapMan:16.5.2.1 | : | : | : | : | : |
Description
BnaC01g37620DBnaC01g37620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GGA7]
Coordinates
chrLK032155:+:44461..48117
Molecular Weight (calculated)
58121.5 Da
IEP (calculated)
4.680
GRAVY (calculated)
-0.605
Length
541 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTVAQSAD QSADMLQKLT LDSQPKGSEI PEPKKAAVYQ YGGVDVHSQV PSYDRSLTPL LPSDAADPSV CYVPNAYQQP FYYGYGASGQ DWSEFTGYNP
101: NLEGVDMSAG VYGENGSLVY PGYGYAAYPY SPATSPAPQV GGDGQLYGAQ QYQYPAFFPT GPVATPAQGD VTANKAGGVK TLPAESKNVA SAAGIAKGAP
201: GKPNSQTTLN TSSNFYGNGG PGSGFAAGYQ DPRYSYDAYY GNVSSYDAPK YSDVQRPAAG SGVASSYSKA TSVPSSRNQN YRSNSHYTGV HQAASMAGYG
301: TSQGFLEVKE QTGESNNSCI VPDREQYNKD DFPVEYENAM FFVIKSYSED DVHKSIKYNV WASTPNGNKK LAAAYQEAQQ KPGGCPIFLF FSVNASGQFV
401: GLAEMTGPVD FDTNVEYWQQ DKWTGSFPLK WHIVKDVPNS LLKHITLENN ENKPVTNSRD TQEVKLEQGL KIVKIFKEHT SKTCILDDFS FYELSEEKTA
501: TDEKKESSTA PAGQTTGDGD VTKVDENGSV AKPVGVVANG C
101: NLEGVDMSAG VYGENGSLVY PGYGYAAYPY SPATSPAPQV GGDGQLYGAQ QYQYPAFFPT GPVATPAQGD VTANKAGGVK TLPAESKNVA SAAGIAKGAP
201: GKPNSQTTLN TSSNFYGNGG PGSGFAAGYQ DPRYSYDAYY GNVSSYDAPK YSDVQRPAAG SGVASSYSKA TSVPSSRNQN YRSNSHYTGV HQAASMAGYG
301: TSQGFLEVKE QTGESNNSCI VPDREQYNKD DFPVEYENAM FFVIKSYSED DVHKSIKYNV WASTPNGNKK LAAAYQEAQQ KPGGCPIFLF FSVNASGQFV
401: GLAEMTGPVD FDTNVEYWQQ DKWTGSFPLK WHIVKDVPNS LLKHITLENN ENKPVTNSRD TQEVKLEQGL KIVKIFKEHT SKTCILDDFS FYELSEEKTA
501: TDEKKESSTA PAGQTTGDGD VTKVDENGSV AKPVGVVANG C
001: MDSNGQVPSF DRSLSPMLPS DALDPSVFYV PNVYQQPYYY GYGSDYTGYT NSESVDMTSG YGYAAFPYSP ATSPAPQLGG DGQLYGAQQY QYPFPLTASS
101: GPFASSVPAS TQSKLSTNKA ANSASAGIPK GMNGSAPVKP LNQSALYGNS ALGGGLAAGY QDPRYSYDGF YTPVSWHDGS NFSDVQRSVS GSGVASSYSK
201: ANNNVPATRN QNSSSNSHYT SMYQPASMTG YAAQGYYDRV SPNKSYGQYG STVRSGMGYG SSGYGSRTNE RGWLNTDNKY RSRGRGNSYF YGNENIDGLN
301: ELNRGPRAKG TKATEEVSSE EVKKQTFDES NTEETVTCVL PDREECNRDD FPVEYKDAKF FIIKSYSEDD VHKSIKYNVW ASTPNGNKKL DAAYQEAQQK
401: SSGCPVFLFF SVNASGQFIG LAEMKGPVDF NKNIEYWQQD KWTGSFPLKW HILKDVPNSL LKHITLEYNE NKPVTNSRDT QEVKLEQGLK VVKIFKEHNS
501: KTCILDDFSF YEARQKTILE KKAKQQQSQK QVWEGKTNDE KPGTVDSTM
101: GPFASSVPAS TQSKLSTNKA ANSASAGIPK GMNGSAPVKP LNQSALYGNS ALGGGLAAGY QDPRYSYDGF YTPVSWHDGS NFSDVQRSVS GSGVASSYSK
201: ANNNVPATRN QNSSSNSHYT SMYQPASMTG YAAQGYYDRV SPNKSYGQYG STVRSGMGYG SSGYGSRTNE RGWLNTDNKY RSRGRGNSYF YGNENIDGLN
301: ELNRGPRAKG TKATEEVSSE EVKKQTFDES NTEETVTCVL PDREECNRDD FPVEYKDAKF FIIKSYSEDD VHKSIKYNVW ASTPNGNKKL DAAYQEAQQK
401: SSGCPVFLFF SVNASGQFIG LAEMKGPVDF NKNIEYWQQD KWTGSFPLKW HILKDVPNSL LKHITLEYNE NKPVTNSRDT QEVKLEQGLK VVKIFKEHNS
501: KTCILDDFSF YEARQKTILE KKAKQQQSQK QVWEGKTNDE KPGTVDSTM
Arabidopsis Description
ECT4evolutionarily conserved C-terminal region 4 [Source:TAIR;Acc:AT1G55500]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.