Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43378 | Canola | nucleus | 96.91 | 96.91 |
| CDY51902 | Canola | cytosol | 21.99 | 87.1 |
| CDY23562 | Canola | nucleus | 85.83 | 85.0 |
| AT3G13060.2 | Thale cress | nucleus | 87.62 | 84.86 |
| CDY44025 | Canola | nucleus | 85.67 | 84.57 |
| Zm00001d002008_P001 | Maize | cytosol | 9.61 | 80.82 |
| CDY57677 | Canola | mitochondrion | 13.84 | 49.71 |
| Os08t0556000-01 | Rice | nucleus | 47.72 | 46.96 |
| KXG25412 | Sorghum | cytosol | 47.88 | 46.01 |
| GSMUA_Achr4P12480_001 | Banana | cytosol | 43.49 | 45.96 |
| GSMUA_Achr4P11560_001 | Banana | nucleus | 47.56 | 44.99 |
| HORVU1Hr1G008330.2 | Barley | nucleus | 46.74 | 44.7 |
| TraesCS1A01G044500.1 | Wheat | nucleus | 46.74 | 44.7 |
| TraesCS1B01G057800.3 | Wheat | nucleus | 46.58 | 44.55 |
| Zm00001d031981_P002 | Maize | cytosol | 47.07 | 44.39 |
| TraesCS1D01G045100.1 | Wheat | nucleus | 46.25 | 44.24 |
| EES14722 | Sorghum | nucleus | 42.18 | 43.6 |
| TraesCS7A01G276800.3 | Wheat | nucleus | 43.97 | 43.2 |
| TraesCS7D01G276800.4 | Wheat | nucleus | 43.81 | 43.04 |
| TraesCS7B01G174500.1 | Wheat | nucleus | 41.37 | 42.4 |
| Os08t0224200-01 | Rice | mitochondrion | 42.51 | 42.16 |
| Zm00001d024339_P001 | Maize | extracellular | 40.39 | 41.89 |
| TraesCS7B01G182100.2 | Wheat | cytosol | 40.07 | 41.55 |
| TraesCS7A01G291700.1 | Wheat | cytosol | 39.74 | 41.36 |
| Zm00001d049360_P004 | Maize | extracellular | 40.07 | 41.28 |
| HORVU7Hr1G069070.2 | Barley | cytosol | 39.58 | 41.19 |
| GSMUA_Achr1P10560_001 | Banana | nucleus | 29.48 | 40.67 |
| CDX91541 | Canola | mitochondrion | 10.75 | 40.49 |
| CDY50448 | Canola | cytosol | 16.78 | 40.39 |
| CDY07437 | Canola | nucleus | 27.04 | 39.43 |
| CDY29972 | Canola | nucleus | 26.22 | 39.27 |
| Os04t0608800-01 | Rice | nucleus | 36.32 | 39.26 |
| CDY39299 | Canola | nucleus | 27.04 | 39.24 |
| TraesCS7D01G285000.1 | Wheat | endoplasmic reticulum | 38.93 | 39.05 |
| CDY21154 | Canola | nucleus | 25.57 | 38.57 |
| CDY42891 | Canola | nucleus | 25.08 | 38.5 |
| CDY50867 | Canola | nucleus | 25.08 | 38.5 |
| GSMUA_Achr4P04600_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 48.21 | 38.39 |
| CDY02802 | Canola | nucleus | 33.22 | 38.2 |
| CDY69959 | Canola | nucleus | 24.76 | 38.1 |
| CDY58572 | Canola | nucleus | 31.43 | 38.07 |
| CDX88661 | Canola | nucleus | 31.6 | 38.04 |
| CDY32718 | Canola | nucleus | 32.74 | 38.0 |
| Zm00001d008913_P001 | Maize | cytosol, nucleus, peroxisome | 24.43 | 37.59 |
| KXG27074 | Sorghum | cytosol | 33.55 | 37.32 |
| CDY56132 | Canola | nucleus | 27.04 | 37.14 |
| CDX87395 | Canola | cytosol | 26.71 | 36.94 |
| CDY52966 | Canola | cytosol | 26.55 | 36.38 |
| Zm00001d002372_P002 | Maize | nucleus | 32.57 | 36.23 |
| CDX88524 | Canola | cytosol | 26.06 | 36.2 |
| HORVU7Hr1G058250.46 | Barley | cytosol, plastid | 27.52 | 35.65 |
| CDY22270 | Canola | cytosol | 25.9 | 35.49 |
| CDX90116 | Canola | nucleus | 29.97 | 35.32 |
| CDY67303 | Canola | nucleus | 29.97 | 35.32 |
| CDY56809 | Canola | cytosol | 25.73 | 35.27 |
| CDY05744 | Canola | cytosol | 7.0 | 34.13 |
| CDY43989 | Canola | nucleus | 35.02 | 33.91 |
| CDY24182 | Canola | nucleus | 29.8 | 33.83 |
| CDY23602 | Canola | nucleus | 34.36 | 33.81 |
| CDY11758 | Canola | nucleus, plastid | 29.97 | 33.21 |
| CDX75712 | Canola | nucleus | 34.2 | 33.12 |
| CDY07089 | Canola | nucleus | 34.04 | 32.86 |
| CDX82538 | Canola | nucleus | 34.2 | 32.81 |
| CDX68000 | Canola | nucleus | 26.71 | 32.22 |
| CDX79309 | Canola | nucleus | 26.22 | 31.63 |
| Zm00001d047072_P001 | Maize | mitochondrion | 24.76 | 31.08 |
| CDX94944 | Canola | nucleus | 24.76 | 30.58 |
| CDX93476 | Canola | nucleus | 24.43 | 30.0 |
| CDX93645 | Canola | nucleus | 27.69 | 27.78 |
| CDY43306 | Canola | cytosol | 27.69 | 27.73 |
| CDY60520 | Canola | cytosol | 4.89 | 22.73 |
Protein Annotations
| EnsemblPlants:CDY24224 | EnsemblPlantsGene:GSBRNA2T00026328001 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF24 | PFAM:PF04146 |
| PFscan:PS50882 | ProteinID:CDY24224 | ProteinID:CDY24224.1 | SEG:seg | UniParc:UPI0004EF3014 | UniProt:A0A078GFW8 |
| MapMan:16.5.2.1 | : | : | : | : | : |
Description
BnaC01g38040DBnaC01g38040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFW8]
Coordinates
chrLK032155:-:311673..315126
Molecular Weight (calculated)
67937.2 Da
IEP (calculated)
5.019
GRAVY (calculated)
-0.743
Length
614 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTPPSHAT DLLITSEEQP VNLDIMKEQS VAANNETSAS FNKSSQEPAV VVHPAKVSPL SAPYGLSGDF AGHLPSSILS PQAQGFYYRG YETPTGEWDE
101: YSSYVNVEGL DINSPVGFNE NASLVYQTGY GYNPQMPYGP YSPAATPLPS EAQLYSPQQF PFSGASPYYQ QVVPPSMQYL SSPTQPELTS LVAVDQQGDN
201: IARPSYQPHP IGPFNGSQQN LGFPEWQQGF DGGIWSDWSK PSDMHRHSSS FSPALSPQPL GSFGSYGHNI PMGSQRQRPF YGRGQGSNYG SRLNSYVGMG
301: NQSWIGVDNT RGRGRVSDPY LGGGYNGNYD ILNEQNRGPR ALKPKTHVSE ELDSSADSKK NNKDSPKEEA NNNNNPEFVT DYSDAKLFII KSYSEDNVHK
401: SIKYNVWAST PNGNKKLDAA YREAKEEKEA CPVFLLFSVN ASSQFCGVAE MIGPVDFEKS VDYWQQDKWN GQFPVKWHII KDVPNSQFRH IILENNDNKP
501: VTNSRDTQEV KLEQGIEMLK IFKNYDAETS ILDDFGFYEE REKIIQERKA RRLPNLTSAV GGENEHKPAS TALQTDFIKN MSKSFAQVVR LDEGSKASPD
601: ATTTTVAVSS GQSN
101: YSSYVNVEGL DINSPVGFNE NASLVYQTGY GYNPQMPYGP YSPAATPLPS EAQLYSPQQF PFSGASPYYQ QVVPPSMQYL SSPTQPELTS LVAVDQQGDN
201: IARPSYQPHP IGPFNGSQQN LGFPEWQQGF DGGIWSDWSK PSDMHRHSSS FSPALSPQPL GSFGSYGHNI PMGSQRQRPF YGRGQGSNYG SRLNSYVGMG
301: NQSWIGVDNT RGRGRVSDPY LGGGYNGNYD ILNEQNRGPR ALKPKTHVSE ELDSSADSKK NNKDSPKEEA NNNNNPEFVT DYSDAKLFII KSYSEDNVHK
401: SIKYNVWAST PNGNKKLDAA YREAKEEKEA CPVFLLFSVN ASSQFCGVAE MIGPVDFEKS VDYWQQDKWN GQFPVKWHII KDVPNSQFRH IILENNDNKP
501: VTNSRDTQEV KLEQGIEMLK IFKNYDAETS ILDDFGFYEE REKIIQERKA RRLPNLTSAV GGENEHKPAS TALQTDFIKN MSKSFAQVVR LDEGSKASPD
601: ATTTTVAVSS GQSN
001: MATTQSHTSD LTSEEQPASL DIMKEQTVPA NNETSASFKS SQEAPVVVHP AKVAPLTGPY GLAGDFAGHL PSSILSPQAQ GFYYRGYENP TGEWDEYSSY
101: VNVEGLDITS PVGFNENASL VYQTGYGYNP QMPYGPYSPA ASPLPSEGQL YSPQQFPFSG ASPYYQQVVP PSMQYITSPT QPELTSLVGV DQQGDNIGPR
201: QSYHPHPIGP FNGNQPNLGF PEWQQGFDGG IWSDWSKPSD MHRHSSSISP ALSPQPLGSY GSYGQNIPMG SQRQRSFYGF GSGSNSYNRG YMHSGGRGQG
301: SNYGSRLISN VGMGNQGWIG VDNSRGRGRV SDPSLGGAYN GTFDILNEQN RGPRASKPKT QVLEELDSAA DSKKNNKGSA KEHEESNNAD FVTDYTNAKL
401: FIIKSYSEDN VHKSIKYNVW ASTPNGNKKL DAAYREAKDE KEPCPLFLLF SVNASSQFCG VAEMVGPVDF EKSVDYWQQD KWSGQFPVKW HIIKDVPNSQ
501: FRHIILENND NKPVTNSRDT QEVKLEQGIE MLKIFKNYDA DTSILDDFGF YEEREKIIQD RKARRQPSLP SAGVVAGENE HKPASAALPT DFMKNMSKSF
601: AQVVRLDEGS KEAVKASSSP DAITTAAVSS GQSN
101: VNVEGLDITS PVGFNENASL VYQTGYGYNP QMPYGPYSPA ASPLPSEGQL YSPQQFPFSG ASPYYQQVVP PSMQYITSPT QPELTSLVGV DQQGDNIGPR
201: QSYHPHPIGP FNGNQPNLGF PEWQQGFDGG IWSDWSKPSD MHRHSSSISP ALSPQPLGSY GSYGQNIPMG SQRQRSFYGF GSGSNSYNRG YMHSGGRGQG
301: SNYGSRLISN VGMGNQGWIG VDNSRGRGRV SDPSLGGAYN GTFDILNEQN RGPRASKPKT QVLEELDSAA DSKKNNKGSA KEHEESNNAD FVTDYTNAKL
401: FIIKSYSEDN VHKSIKYNVW ASTPNGNKKL DAAYREAKDE KEPCPLFLLF SVNASSQFCG VAEMVGPVDF EKSVDYWQQD KWSGQFPVKW HIIKDVPNSQ
501: FRHIILENND NKPVTNSRDT QEVKLEQGIE MLKIFKNYDA DTSILDDFGF YEEREKIIQD RKARRQPSLP SAGVVAGENE HKPASAALPT DFMKNMSKSF
601: AQVVRLDEGS KEAVKASSSP DAITTAAVSS GQSN
Arabidopsis Description
ECT5Evolutionarily conserved C-terminal region 5 [Source:UniProtKB/TrEMBL;Acc:Q0WR25]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.