Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra006780.1-P | Field mustard | cytosol | 93.53 | 93.71 |
| CDY58572 | Canola | nucleus | 91.37 | 91.91 |
| CDY32718 | Canola | nucleus | 78.63 | 75.8 |
| CDY02802 | Canola | nucleus | 78.63 | 75.09 |
| AT5G58190.2 | Thale cress | nucleus | 73.73 | 71.21 |
| Zm00001d002008_P001 | Maize | cytosol | 9.22 | 64.38 |
| CDY51902 | Canola | cytosol | 13.33 | 43.87 |
| CDY57677 | Canola | mitochondrion | 13.14 | 39.18 |
| CDY50448 | Canola | cytosol | 17.25 | 34.51 |
| Solyc05g032850.2.1 | Tomato | nucleus | 39.8 | 33.61 |
| CDY69959 | Canola | nucleus | 26.08 | 33.33 |
| CDY50867 | Canola | nucleus | 26.08 | 33.25 |
| CDY42891 | Canola | nucleus | 26.08 | 33.25 |
| GSMUA_Achr1P10560_001 | Banana | nucleus | 28.82 | 33.03 |
| CDY44025 | Canola | nucleus | 38.63 | 31.67 |
| CDY43378 | Canola | nucleus | 38.04 | 31.6 |
| CDY24224 | Canola | nucleus | 38.04 | 31.6 |
| Os08t0556000-01 | Rice | nucleus | 38.63 | 31.57 |
| CDY23562 | Canola | nucleus | 38.24 | 31.45 |
| CDY21154 | Canola | nucleus | 25.1 | 31.45 |
| CDY39299 | Canola | nucleus | 26.08 | 31.44 |
| CDY07437 | Canola | nucleus | 25.88 | 31.35 |
| CDX91541 | Canola | mitochondrion | 10.0 | 31.29 |
| CDY56809 | Canola | cytosol | 27.45 | 31.25 |
| CDY22270 | Canola | cytosol | 27.45 | 31.25 |
| CDY29972 | Canola | nucleus | 25.1 | 31.22 |
| GSMUA_Achr4P12480_001 | Banana | cytosol | 35.49 | 31.15 |
| TraesCS1B01G057800.3 | Wheat | nucleus | 38.63 | 30.69 |
| TraesCS1A01G044500.1 | Wheat | nucleus | 38.63 | 30.69 |
| CDX87395 | Canola | cytosol | 26.67 | 30.63 |
| TraesCS1D01G045100.1 | Wheat | nucleus | 38.43 | 30.53 |
| KXG25412 | Sorghum | cytosol | 38.24 | 30.52 |
| HORVU1Hr1G008330.2 | Barley | nucleus | 38.24 | 30.37 |
| CDX88524 | Canola | cytosol | 26.27 | 30.32 |
| EES14722 | Sorghum | nucleus | 35.29 | 30.3 |
| Zm00001d008913_P001 | Maize | cytosol, nucleus, peroxisome | 23.53 | 30.08 |
| Zm00001d024339_P001 | Maize | extracellular | 34.9 | 30.07 |
| TraesCS7B01G174500.1 | Wheat | nucleus | 35.29 | 30.05 |
| TraesCS7D01G276800.4 | Wheat | nucleus | 36.47 | 29.76 |
| TraesCS7A01G276800.3 | Wheat | nucleus | 36.47 | 29.76 |
| GSMUA_Achr4P11560_001 | Banana | nucleus | 37.84 | 29.74 |
| Zm00001d049360_P004 | Maize | extracellular | 34.31 | 29.36 |
| HORVU7Hr1G069070.2 | Barley | cytosol | 33.92 | 29.32 |
| TraesCS7B01G182100.2 | Wheat | cytosol | 33.92 | 29.22 |
| Zm00001d031981_P002 | Maize | cytosol | 37.25 | 29.19 |
| TraesCS7A01G291700.1 | Wheat | cytosol | 33.53 | 28.98 |
| Os04t0608800-01 | Rice | nucleus | 31.96 | 28.7 |
| Os08t0224200-01 | Rice | mitochondrion | 34.71 | 28.59 |
| CDX68000 | Canola | nucleus | 28.04 | 28.09 |
| TraesCS7D01G285000.1 | Wheat | endoplasmic reticulum | 33.53 | 27.94 |
| Zm00001d002372_P002 | Maize | nucleus | 30.0 | 27.72 |
| CDY56132 | Canola | nucleus | 24.12 | 27.52 |
| CDX79309 | Canola | nucleus | 27.45 | 27.5 |
| VIT_11s0065g00160.t01 | Wine grape | nucleus | 39.61 | 27.48 |
| KXG27074 | Sorghum | cytosol | 29.61 | 27.36 |
| CDY05744 | Canola | cytosol | 6.67 | 26.98 |
| CDY52966 | Canola | cytosol | 23.53 | 26.79 |
| CDX94944 | Canola | nucleus | 26.08 | 26.76 |
| CDX93476 | Canola | nucleus | 26.08 | 26.6 |
| CDY24182 | Canola | nucleus | 28.04 | 26.43 |
| CDY23602 | Canola | nucleus | 30.98 | 25.32 |
| HORVU7Hr1G058250.46 | Barley | cytosol, plastid | 23.53 | 25.32 |
| Zm00001d047072_P001 | Maize | mitochondrion | 24.12 | 25.15 |
| CDY43989 | Canola | nucleus | 31.18 | 25.08 |
| GSMUA_Achr4P04600_001 | Banana | endoplasmic reticulum, plasma membrane, vacuole | 37.65 | 24.9 |
| CDX82538 | Canola | nucleus | 30.78 | 24.53 |
| CDY67303 | Canola | nucleus | 24.9 | 24.38 |
| CDX90116 | Canola | nucleus | 24.9 | 24.38 |
| CDX75712 | Canola | nucleus | 30.2 | 24.29 |
| CDY07089 | Canola | nucleus | 30.2 | 24.21 |
| CDY43306 | Canola | cytosol | 28.43 | 23.65 |
| CDY11758 | Canola | nucleus, plastid | 25.29 | 23.29 |
| CDX93645 | Canola | nucleus | 26.86 | 22.39 |
| CDY60520 | Canola | cytosol | 5.49 | 21.21 |
Protein Annotations
| EnsemblPlants:CDX88661 | EnsemblPlantsGene:GSBRNA2T00148704001 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF56 | PFAM:PF04146 |
| PFscan:PS50882 | ProteinID:CDX88661 | ProteinID:CDX88661.1 | SEG:seg | UniParc:UPI0004EDCBDA | MapMan:16.5.2.1 |
Description
BnaA03g09880D
Coordinates
chrLK031856:+:381671..384192
Molecular Weight (calculated)
56311.6 Da
IEP (calculated)
5.408
GRAVY (calculated)
-0.729
Length
510 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHPASSRNQ HNGTVSSGVK GFVEQQISPG DERIVSSSSS SSTSLAHPPD PSLYYQNPTN LYPYGWNVAH SGYPQGINAW DGYPLYATSP EGLHIPQVVY
101: NEDSSLMYQP GFAYNPYPSM MLEGQIPFSP AYYPQFGMHF SHSEFGGGND PTSAYMIPFD GYGGGNLSGN QGANSLTYPQ AMGILGPYDH DASQLPLHGN
201: GISSSSSLGG YYPVGSYQSP SSIASYHEAD NPVRLASDIG KRRENQYSSV LTTSDLYGNR GPRSFTRVKS KNGSGLISSA GDATNDSSTA GTNPSLYNHP
301: EFETDYKNAR FFIVKSFSED NVHRSIKYNV WASTPHGNKK LDTAYGDAEK MGGKCPIFLF FSVNASGQFC GVAEMVGPVD FEKDAAYWQQ GKWNGQFPVR
401: WHIVKDVPNN RFSHVLLQNN DNKPVTHSRD SQEVKLRQGI EMLRIFKEYE AHTSILDDFD YYDERESQKV GEDGGRKQET SCVEQLSERL QAVSVEDGKE
501: GEKEDLKEKT
101: NEDSSLMYQP GFAYNPYPSM MLEGQIPFSP AYYPQFGMHF SHSEFGGGND PTSAYMIPFD GYGGGNLSGN QGANSLTYPQ AMGILGPYDH DASQLPLHGN
201: GISSSSSLGG YYPVGSYQSP SSIASYHEAD NPVRLASDIG KRRENQYSSV LTTSDLYGNR GPRSFTRVKS KNGSGLISSA GDATNDSSTA GTNPSLYNHP
301: EFETDYKNAR FFIVKSFSED NVHRSIKYNV WASTPHGNKK LDTAYGDAEK MGGKCPIFLF FSVNASGQFC GVAEMVGPVD FEKDAAYWQQ GKWNGQFPVR
401: WHIVKDVPNN RFSHVLLQNN DNKPVTHSRD SQEVKLRQGI EMLRIFKEYE AHTSILDDFD YYDERESQKV GEDGGRKQET SCVEQLSERL QAVSVEDGKE
501: GEKEDLKEKT
001: MDPASSSSSN QRNRIVSSGE RPVMADNGVQ QQVSHDDGRN IVSSSYSSSV VPSPDPAPYY NVLQTPTNLY HYDWDIANSG YAQGINTWDG YPRYATTTPE
101: AMHVPPVVYN DNSSLMYQYP GYGFNPYPSV MLEGQIPVSP AYYPQPFGAP SAMHYLPSDI DPTSAAYMIP YGQYGGGNYS GNQGDISLTS HIPYPQTMGI
201: LGPYDHNASQ VALHGSGVAS SSSLGGYYHV GSYQNPSSTP SYYGVDNRVR LTPDIGKRRE KDQGSISSTS DLYGNRGPRA SSRVKSKNSS KPCSTIGDSA
301: SDSSTAGPNP SLYNHPEFVT DYKNAKFFIV KSFSEDNVHR SIKYNVWAST PHGNKKLDTA YRDAEKMGGK CPIFLFFSVN ASGQFCGVSE MVGPVDFEKD
401: AGYWQQDRWS GQFPVKWHIV KDIPNNRFCH ILLQNNDNKP VTHSRDSQEV KLRQGIEMLR IFKEYEAHTS ILDDFGYYDE LEGQKVGEDG TRKKAGEEET
501: SVEQLSERLQ AVKVEDGKEE EKKELIAD
101: AMHVPPVVYN DNSSLMYQYP GYGFNPYPSV MLEGQIPVSP AYYPQPFGAP SAMHYLPSDI DPTSAAYMIP YGQYGGGNYS GNQGDISLTS HIPYPQTMGI
201: LGPYDHNASQ VALHGSGVAS SSSLGGYYHV GSYQNPSSTP SYYGVDNRVR LTPDIGKRRE KDQGSISSTS DLYGNRGPRA SSRVKSKNSS KPCSTIGDSA
301: SDSSTAGPNP SLYNHPEFVT DYKNAKFFIV KSFSEDNVHR SIKYNVWAST PHGNKKLDTA YRDAEKMGGK CPIFLFFSVN ASGQFCGVSE MVGPVDFEKD
401: AGYWQQDRWS GQFPVKWHIV KDIPNNRFCH ILLQNNDNKP VTHSRDSQEV KLRQGIEMLR IFKEYEAHTS ILDDFGYYDE LEGQKVGEDG TRKKAGEEET
501: SVEQLSERLQ AVKVEDGKEE EKKELIAD
Arabidopsis Description
ECT10Evolutionarily conserved C-terminal region 10 [Source:UniProtKB/TrEMBL;Acc:F4KDJ9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.