Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13460.1 | CDX75921 | AT3G17510.1 | 16113215 |
| AT3G13460.1 | CDX82366 | AT3G17510.1 | 16113215 |
| AT3G13460.1 | CDX92136 | AT3G17510.1 | 16113215 |
| AT3G13460.1 | CDX95849 | AT3G17510.1 | 16113215 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra001506.1-P | Field mustard | nucleus | 97.66 | 97.81 |
| CDX75712 | Canola | nucleus | 94.06 | 94.95 |
| CDY43989 | Canola | nucleus | 84.06 | 84.86 |
| CDY23602 | Canola | nucleus | 82.19 | 84.29 |
| CDY07089 | Canola | nucleus | 81.88 | 82.39 |
| CDY24182 | Canola | nucleus | 69.22 | 81.89 |
| AT3G13460.1 | Thale cress | cytosol | 80.47 | 77.21 |
| VIT_06s0004g00200.t01 | Wine grape | nucleus | 61.25 | 55.6 |
| CDY57677 | Canola | mitochondrion | 14.53 | 54.39 |
| KRH43005 | Soybean | nucleus | 59.84 | 54.17 |
| KRH59123 | Soybean | nucleus | 59.38 | 53.67 |
| Solyc01g028860.2.1 | Tomato | nucleus | 56.88 | 51.56 |
| CDY07437 | Canola | nucleus | 33.44 | 50.83 |
| CDY39299 | Canola | nucleus | 32.81 | 49.65 |
| CDY05744 | Canola | cytosol | 9.69 | 49.21 |
| PGSC0003DMT400061684 | Potato | endoplasmic reticulum, plasma membrane | 56.09 | 48.78 |
| CDY56132 | Canola | nucleus | 34.06 | 48.77 |
| GSMUA_Achr7P01490_001 | Banana | nucleus | 42.66 | 48.75 |
| CDY69959 | Canola | nucleus | 30.16 | 48.37 |
| CDY50448 | Canola | cytosol | 19.22 | 48.24 |
| CDY52966 | Canola | cytosol | 33.75 | 48.21 |
| GSMUA_Achr4P22630_001 | Banana | nucleus | 46.41 | 47.83 |
| CDY21154 | Canola | nucleus | 30.31 | 47.67 |
| CDY29972 | Canola | nucleus | 30.31 | 47.32 |
| CDY50867 | Canola | nucleus | 29.53 | 47.25 |
| CDY42891 | Canola | nucleus | 29.53 | 47.25 |
| GSMUA_Achr7P27220_001 | Banana | cytosol | 48.44 | 46.9 |
| CDX91541 | Canola | mitochondrion | 11.88 | 46.63 |
| GSMUA_Achr4P21380_001 | Banana | nucleus | 47.5 | 46.2 |
| GSMUA_Achr4P28430_001 | Banana | nucleus, plastid | 44.22 | 46.02 |
| GSMUA_Achr5P02830_001 | Banana | cytosol | 44.22 | 45.94 |
| GSMUA_Achr4P14820_001 | Banana | cytosol | 23.59 | 45.62 |
| EER93461 | Sorghum | nucleus | 45.94 | 44.61 |
| CDY51902 | Canola | cytosol | 10.78 | 44.52 |
| Os03t0748000-01 | Rice | plasma membrane | 45.16 | 43.72 |
| Zm00001d034005_P003 | Maize | plasma membrane | 44.84 | 43.48 |
| KXG40139 | Sorghum | plastid | 48.28 | 43.46 |
| TraesCS5B01G391500.1 | Wheat | nucleus | 44.84 | 43.35 |
| TraesCS5D01G396400.3 | Wheat | nucleus | 44.53 | 43.05 |
| Os03t0158500-01 | Rice | nucleus | 47.34 | 42.86 |
| TraesCS5A01G386600.2 | Wheat | nucleus | 44.38 | 42.84 |
| HORVU5Hr1G094950.6 | Barley | cytosol, nucleus | 44.38 | 42.71 |
| TraesCS4D01G273200.4 | Wheat | cytosol | 45.94 | 40.66 |
| TraesCS4A01G031600.2 | Wheat | cytosol | 45.78 | 40.19 |
| EER93313 | Sorghum | cytosol | 35.78 | 40.03 |
| HORVU4Hr1G072940.4 | Barley | cytosol | 46.41 | 40.03 |
| TraesCS5A01G431200.1 | Wheat | nucleus | 36.56 | 39.73 |
| TraesCS5D01G439100.1 | Wheat | nucleus | 36.41 | 39.63 |
| TraesCS4B01G274500.2 | Wheat | plastid | 47.19 | 39.37 |
| KXG34475 | Sorghum | cytosol | 39.53 | 39.16 |
| TraesCS5B01G433000.1 | Wheat | cytosol | 36.41 | 39.09 |
| Zm00001d048424_P003 | Maize | plastid | 45.16 | 39.05 |
| Os07t0170300-01 | Rice | plasma membrane | 35.16 | 37.38 |
| Zm00001d027731_P012 | Maize | plastid | 46.88 | 37.36 |
| TraesCS5A01G431100.1 | Wheat | cytosol | 37.34 | 37.23 |
| TraesCS5D01G439200.1 | Wheat | cytosol | 36.88 | 36.76 |
| TraesCS5B01G432900.2 | Wheat | extracellular | 37.19 | 36.73 |
| Zm00001d007890_P002 | Maize | mitochondrion | 37.19 | 36.45 |
| CDY60520 | Canola | cytosol | 7.5 | 36.36 |
| CDY56809 | Canola | cytosol | 25.16 | 35.94 |
| CDY22270 | Canola | cytosol | 25.16 | 35.94 |
| CDX87395 | Canola | cytosol | 24.84 | 35.81 |
| CDX88524 | Canola | cytosol | 24.53 | 35.52 |
| HORVU5Hr1G104380.1 | Barley | plastid | 36.56 | 35.4 |
| Zm00001d018896_P002 | Maize | mitochondrion | 38.91 | 35.27 |
| CDY23562 | Canola | nucleus | 33.75 | 34.84 |
| CDY44025 | Canola | nucleus | 33.59 | 34.57 |
| CDY43378 | Canola | nucleus | 32.97 | 34.36 |
| CDY24224 | Canola | nucleus | 32.81 | 34.2 |
| HORVU5Hr1G104390.3 | Barley | plastid | 36.09 | 33.58 |
| CDX94944 | Canola | nucleus | 25.62 | 33.0 |
| CDX79309 | Canola | nucleus | 26.09 | 32.81 |
| CDX68000 | Canola | nucleus | 25.94 | 32.61 |
| CDX93476 | Canola | nucleus | 25.16 | 32.2 |
| CDY02802 | Canola | nucleus | 26.09 | 31.27 |
| CDX90116 | Canola | nucleus | 25.31 | 31.09 |
| CDY67303 | Canola | nucleus | 25.31 | 31.09 |
| CDX88661 | Canola | nucleus | 24.53 | 30.78 |
| CDY58572 | Canola | nucleus | 24.38 | 30.77 |
| CDY32718 | Canola | nucleus | 25.16 | 30.43 |
| CDY43306 | Canola | cytosol | 28.75 | 30.02 |
| CDX93645 | Canola | nucleus | 27.97 | 29.25 |
| CDY11758 | Canola | nucleus, plastid | 25.16 | 29.06 |
Protein Annotations
| EnsemblPlants:CDX82538 | EnsemblPlantsGene:GSBRNA2T00137694001 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | ncoils:Coil | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF63 |
| PFAM:PF04146 | PFscan:PS50882 | ProteinID:CDX82538 | ProteinID:CDX82538.1 | SEG:seg | UniParc:UPI0004EF3501 |
| MapMan:16.5.2.1 | : | : | : | : | : |
Description
BnaA03g32830D
Coordinates
chrLK031828:+:1799885..1803176
Molecular Weight (calculated)
69545.3 Da
IEP (calculated)
5.421
GRAVY (calculated)
-0.784
Length
640 amino acids
Sequence
(BLAST)
(BLAST)
001: MATVASSPAD QSADMLQNLS LDSQPKAASE IPEPKKTAVY QYGGVDLNGQ VPSFDRSLTP LLPSDAVDPS VCYVPNAYQQ PFYYGGYGTG DWSEYTGYQT
101: PEGVDMTSGY GYAAYPYSPA TSPAPQVGGD GQLYGAQQYQ YPAFFPTGSF ASSVATPTQG DLAANKAGGL KPAESKNVAS AAGMAKGTNG SAAGKPNNQT
201: AFNTSSNMYG NGATAGGYAA GYQDARFNYD GYYGTGYSDV QRPVASSYSK ANSVTSSRNQ NYRSNSNYTG VHQPASMTSY GTHGYYSKMY QSKLYGNYGS
301: SGRSGMGYSS SWYDSRTNGR GWGSTTDNRY RGFGRGNSFF YGNENNADGL NELNRGPRAR GAKNQKENSE DSLEVKEQTS ESNVAEAVET ENTCIVPDRE
401: QYNKEDFPVD YANAMFFVIK SYSEDDVHKS IKYNVWASTP NGNKKLAAAY QEAQQKPGGC PIFLFFSVNA SGQFVGLAEM TGPVDFDTNV DYWQQDKWTG
501: SFPLKWHIVK DVPNSLLKHI TLENNENKPV TNSRDTQEVK LEQGLKIVKI FKEHTSKTCI LDDFSFYEVR QKTILEKKAK QHQTQKQVSE EKTTTDEKKE
601: TATADSANKE SPPAAQTTGD VKVDENGSVA KPVGVVANGC
101: PEGVDMTSGY GYAAYPYSPA TSPAPQVGGD GQLYGAQQYQ YPAFFPTGSF ASSVATPTQG DLAANKAGGL KPAESKNVAS AAGMAKGTNG SAAGKPNNQT
201: AFNTSSNMYG NGATAGGYAA GYQDARFNYD GYYGTGYSDV QRPVASSYSK ANSVTSSRNQ NYRSNSNYTG VHQPASMTSY GTHGYYSKMY QSKLYGNYGS
301: SGRSGMGYSS SWYDSRTNGR GWGSTTDNRY RGFGRGNSFF YGNENNADGL NELNRGPRAR GAKNQKENSE DSLEVKEQTS ESNVAEAVET ENTCIVPDRE
401: QYNKEDFPVD YANAMFFVIK SYSEDDVHKS IKYNVWASTP NGNKKLAAAY QEAQQKPGGC PIFLFFSVNA SGQFVGLAEM TGPVDFDTNV DYWQQDKWTG
501: SFPLKWHIVK DVPNSLLKHI TLENNENKPV TNSRDTQEVK LEQGLKIVKI FKEHTSKTCI LDDFSFYEVR QKTILEKKAK QHQTQKQVSE EKTTTDEKKE
601: TATADSANKE SPPAAQTTGD VKVDENGSVA KPVGVVANGC
001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC
Arabidopsis Description
ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.