Factsheet for Zm00001d027731_P012

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006944_P001
Zm00001d022272_P002
Zm00001d024762_P001
Zm00001d040567_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13460.1	Zm00001d006944_P001	AT3G17510.1	16113215
AT3G13460.1	Zm00001d022272_P002	AT3G17510.1	16113215
AT3G13460.1	Zm00001d024762_P001	AT3G17510.1	16113215
AT3G13460.1	Zm00001d040567_P001	AT3G17510.1	16113215

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG40139	Sorghum	plastid	80.2	90.58
Zm00001d048424_P003	Maize	plastid	74.22	80.54
Os03t0158500-01	Rice	nucleus	70.49	80.06
Zm00001d002008_P001	Maize	cytosol	6.6	72.6
TraesCS4D01G273200.4	Wheat	cytosol	64.13	71.23
TraesCS4A01G031600.2	Wheat	cytosol	63.89	70.37
HORVU4Hr1G072940.4	Barley	cytosol	64.76	70.08
TraesCS4B01G274500.2	Wheat	plastid	66.63	69.75
Zm00001d034005_P003	Maize	plasma membrane	41.72	50.76
CDY57677	Canola	mitochondrion	10.71	50.29
GSMUA_Achr7P27220_001	Banana	cytosol	40.72	49.47
VIT_06s0004g00200.t01	Wine grape	nucleus	43.34	49.36
GSMUA_Achr4P14820_001	Banana	cytosol	20.3	49.24
CDY23602	Canola	nucleus	37.48	48.24
KRH43005	Soybean	nucleus	42.47	48.23
AT1G55500.5	Thale cress	cytosol	36.11	47.93
CDY43989	Canola	nucleus	37.73	47.79
Solyc01g028860.2.1	Tomato	nucleus	41.84	47.59
Bra027432.1-P	Field mustard	nucleus	37.48	47.48
VIT_08s0007g07450.t01	Wine grape	cytosol	40.97	47.41
KRH59123	Soybean	nucleus	41.72	47.32
CDX82538	Canola	nucleus	37.36	46.88
AT3G13460.1	Thale cress	cytosol	38.85	46.78
Bra001506.1-P	Field mustard	nucleus	36.99	46.48
Bra039400.1-P	Field mustard	nucleus	36.74	46.38
CDY50448	Canola	cytosol	14.69	46.27
Bra004105.1-P	Field mustard	nucleus	22.79	46.21
CDX75712	Canola	nucleus	36.36	46.06
CDY07089	Canola	nucleus	36.36	45.91
CDY07437	Canola	nucleus	24.03	45.84
CDY50867	Canola	nucleus	22.66	45.5
CDY42891	Canola	nucleus	22.66	45.5
CDY21154	Canola	nucleus	23.04	45.45
CDY39299	Canola	nucleus	23.91	45.39
PGSC0003DMT400061684	Potato	endoplasmic reticulum, plasma membrane	41.59	45.38
CDY69959	Canola	nucleus	22.42	45.11
CDY24182	Canola	nucleus	30.39	45.1
Bra036423.1-P	Field mustard	nucleus	22.79	45.07
Bra031960.1-P	Field mustard	nucleus	22.17	44.95
Bra008509.1-P	Field mustard	cytosol	23.41	44.44
CDY29972	Canola	nucleus	22.66	44.39
AT3G03950.3	Thale cress	cytosol	23.41	43.93
CDY56132	Canola	nucleus	24.41	43.85
CDX91541	Canola	mitochondrion	8.84	43.56
CDY52966	Canola	cytosol	24.28	43.53
KRG94807	Soybean	nucleus	32.75	39.91
AT5G61020.1	Thale cress	cytosol	24.16	39.19
KRH06717	Soybean	nucleus	32.01	38.76
KRH70155	Soybean	nucleus	30.01	38.25
Zm00001d007890_P002	Maize	mitochondrion	30.14	37.06
Bra018951.1-P	Field mustard	cytosol	11.71	36.29
Bra014253.1-P	Field mustard	cytosol	13.32	35.91
Zm00001d018896_P002	Maize	mitochondrion	31.13	35.41
Bra038524.1-P	Field mustard	cytosol	9.84	35.11
Zm00001d008913_P001	Maize	cytosol, nucleus, peroxisome	16.56	33.33
Zm00001d002372_P002	Maize	nucleus	22.54	32.79
Zm00001d024339_P001	Maize	extracellular	23.79	32.26
Zm00001d049360_P004	Maize	extracellular	23.66	31.88
Zm00001d031981_P002	Maize	cytosol	25.65	31.64
Zm00001d011602_P001	Maize	nucleus	23.66	31.2
Zm00001d047072_P001	Maize	mitochondrion	17.93	29.45
Zm00001d043860_P001	Maize	mitochondrion	24.66	29.33
Zm00001d038120_P001	Maize	cytosol	8.34	28.76
Zm00001d032562_P001	Maize	cytosol	9.09	26.35
Zm00001d051781_P001	Maize	cytosol, extracellular	7.85	25.1
Zm00001d048501_P002	Maize	cytosol	21.54	22.82
Zm00001d010826_P001	Maize	cytosol	11.21	21.74
Zm00001d034996_P005	Maize	cytosol	18.43	21.51
Zm00001d049729_P008	Maize	cytosol	18.93	21.11

Protein Annotations

EnsemblPlants:Zm00001d027731_P012	EnsemblPlants:Zm00001d027731_T012	EnsemblPlantsGene:Zm00001d027731	EntrezGene:100383598	Gene3D:3.10.590.10	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357
PANTHER:PTHR12357:SF30	PFAM:PF04146	PFscan:PS50882	ProteinID:ONL93787.1	SEG:seg	UniParc:UPI000842EEB2
UniProt:A0A1D6JP38	MapMan:16.5.2.1	:	:	:	:

Description

evolutionarily conserved C-terminal region 2

Coordinates

chr1:-:12354773..12359619

Molecular Weight (calculated)

87066.5 Da

IEP (calculated)

9.679

GRAVY (calculated)

-0.667

Length

803 amino acids

Sequence
(BLAST)

001: MTPRTPPKTP PFPLHKPCCY PPLPLPAALL RLASLLPSPH APPPPPPPPL APSFYPELKL ARTCLPIRRR GRGDKARSVG RSVGGLSDLA AASPFVRSFV
101: GISRHGRRRA APGPRAGTGS GSCSCHRPCR GSYPSFAAVR QTTDLLQKLS LDSQPKAADA TQPAAATAKK GAAASQPLSV AIPPEPSITP VIQDFTDPNL
201: FYLPAYYYGG YDSSMSEWDD YPRYLNSDGV EIAPAVYGDI YGYGYAPYGA YSPATSPVPT VDGQMFGAQH YQYPTAYFQP PTPVPSTTQS DLQSSKNPEK
301: PAAKADPAKT TNGVPNGTAH SNSGTVPLAS SQQNSSLTPD GTYRAPLLGG VPSAGYLDTT YGYDSTGAHF AWYDGSAYAN GQQRATTTNH FPSSTFGNGS
401: PARYQNKSTT TPQMGMQNRR PTTTSPAPTY PNRMYPSSRP YTQYGNSIKT GLPYGSNGYD SRIYGRWGLG MDNRYRPRGR NGYYGYGNES QDGTIELNRG
501: PRSGRFKNQK LYGHTVTIAV KGQSLPSGES KDDSAVPDRA QFNRDDFPVQ YDAAKFFVIK SYSEDDIHKS VKYNVWASTT NGNKKLDAAY QEAQSKGSAC
601: PIFLFFSVNT SGQFVGVAEM TGAVDFEKTL GYWQQDKWNG SFSVKWHIVK DVPNNILKHI ILENNENKPV TNSRDTQEIH LEQGLQMLKI FKEHVSKTSI
701: LDDFAFYESR QKLMQDKRSK QQQVQKQVWD SRTPISVTGS EQQQEAANGK PNPSVPNGVP AEVKAAKASA ENGTATPAIS YAAKVAQAAT EKPVLANGVA
801: KTG

Best Arabidopsis Sequence Match ( AT1G55500.3 )
(BLAST)

001: MSTVAPPADQ AADVLKKLSL DSKSRTLEIP EPTKKTGVYQ YGAMDSNGQV PSFDRSLSPM LPSDALDPSV FYVPNVYQQP YYYGYGSDYT GYTNSESVDM
101: TSGYGYAAFP YSPATSPAPQ LGGDGQLYGA QQYQYPFPLT ASSGPFASSV PASTQSKLST NKAANSASAG IPKGMNGSAP VKPLNQSALY GNSALGGGLA
201: AGYQDPRYSY DGFYTPVSWH DGSNFSDVQR SVSGSGVASS YSKANNNVPA TRNQNSSSNS HYTSMYQPAS MTGYAAQGYY DRVSPNKSYG QYGSTVRSGM
301: GYGSSGYGSR TNERGWLNTD NKYRSRGRGN SYFYGNENID GLNELNRGPR AKGTKATEEV SSEEVKKQTF DESNTEETVT CVLPDREECN RDDFPVEYKD
401: AKFFIIKSYS EDDVHKSIKY NVWASTPNGN KKLDAAYQEA QQKSSGCPVF LFFSVNASGQ FIGLAEMKGP VDFNKNIEYW QQDKWTGSFP LKWHILKDVP
501: NSLLKHITLE YNENKPVTNS RDTQEVKLEQ GLKVVKIFKE HNSKTCILDD FSFYEARQKT ILEKKAKQQQ SQKQVWEGKT NDEKPGTVDS TM

Arabidopsis Description

ECT4evolutionarily conserved C-terminal region 4 [Source:TAIR;Acc:AT1G55500]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.