Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21154 | Canola | nucleus | 93.66 | 94.35 |
| Bra036423.1-P | Field mustard | nucleus | 92.2 | 93.1 |
| CDY69959 | Canola | nucleus | 79.76 | 81.95 |
| CDY42891 | Canola | nucleus | 79.76 | 81.75 |
| CDY50867 | Canola | nucleus | 79.76 | 81.75 |
| AT3G03950.3 | Thale cress | cytosol | 78.78 | 75.47 |
| CDY57677 | Canola | mitochondrion | 19.51 | 46.78 |
| CDY51902 | Canola | cytosol | 16.59 | 43.87 |
| CDY07437 | Canola | nucleus | 42.44 | 41.33 |
| CDY39299 | Canola | nucleus | 41.71 | 40.43 |
| CDY05744 | Canola | cytosol | 11.95 | 38.89 |
| CDY56132 | Canola | nucleus | 41.22 | 37.81 |
| CDY50448 | Canola | cytosol | 23.41 | 37.65 |
| CDY52966 | Canola | cytosol | 40.49 | 37.05 |
| CDX91541 | Canola | mitochondrion | 14.39 | 36.2 |
| GSMUA_Achr4P14820_001 | Banana | cytosol | 26.83 | 33.23 |
| GSMUA_Achr7P01490_001 | Banana | nucleus | 43.41 | 31.79 |
| CDY23602 | Canola | nucleus | 47.32 | 31.09 |
| CDY43989 | Canola | nucleus | 47.56 | 30.76 |
| CDX82538 | Canola | nucleus | 47.32 | 30.31 |
| CDX75712 | Canola | nucleus | 46.59 | 30.13 |
| GSMUA_Achr4P22630_001 | Banana | nucleus | 44.63 | 29.47 |
| GSMUA_Achr5P02830_001 | Banana | cytosol | 43.9 | 29.22 |
| EER93313 | Sorghum | cytosol | 40.73 | 29.2 |
| EER93461 | Sorghum | nucleus | 46.83 | 29.14 |
| CDY07089 | Canola | nucleus | 45.12 | 29.09 |
| CDY22270 | Canola | cytosol | 31.71 | 29.02 |
| VIT_08s0007g07450.t01 | Wine grape | cytosol | 48.78 | 28.82 |
| Os03t0748000-01 | Rice | plasma membrane | 46.34 | 28.74 |
| CDY24182 | Canola | nucleus | 37.8 | 28.65 |
| Zm00001d034005_P003 | Maize | plasma membrane | 46.1 | 28.64 |
| GSMUA_Achr4P21380_001 | Banana | nucleus | 45.85 | 28.57 |
| CDY56809 | Canola | cytosol | 31.22 | 28.57 |
| CDX87395 | Canola | cytosol | 30.73 | 28.38 |
| CDX88524 | Canola | cytosol | 30.24 | 28.05 |
| GSMUA_Achr4P28430_001 | Banana | nucleus, plastid | 41.95 | 27.97 |
| TraesCS5D01G396400.3 | Wheat | nucleus | 44.63 | 27.64 |
| TraesCS5B01G391500.1 | Wheat | nucleus | 44.39 | 27.49 |
| TraesCS5A01G386600.2 | Wheat | nucleus | 44.39 | 27.45 |
| TraesCS5D01G439100.1 | Wheat | nucleus | 39.27 | 27.38 |
| TraesCS5A01G431200.1 | Wheat | nucleus | 39.27 | 27.33 |
| Os07t0170300-01 | Rice | plasma membrane | 40.0 | 27.24 |
| CDY23562 | Canola | nucleus | 40.98 | 27.1 |
| HORVU5Hr1G094950.6 | Barley | cytosol, nucleus | 43.9 | 27.07 |
| TraesCS5B01G433000.1 | Wheat | cytosol | 39.27 | 27.01 |
| CDY44025 | Canola | nucleus | 40.73 | 26.85 |
| KRH70155 | Soybean | nucleus | 41.22 | 26.83 |
| GSMUA_Achr7P27220_001 | Banana | cytosol | 43.17 | 26.78 |
| CDX94944 | Canola | nucleus | 32.2 | 26.56 |
| CDY43378 | Canola | nucleus | 39.27 | 26.22 |
| CDY24224 | Canola | nucleus | 39.27 | 26.22 |
| KRG94807 | Soybean | nucleus | 41.95 | 26.1 |
| CDX68000 | Canola | nucleus | 32.2 | 25.93 |
| TraesCS5A01G431100.1 | Wheat | cytosol | 40.49 | 25.86 |
| Os03t0158500-01 | Rice | nucleus | 44.39 | 25.74 |
| KXG40139 | Sorghum | plastid | 44.63 | 25.74 |
| CDX79309 | Canola | nucleus | 31.95 | 25.74 |
| TraesCS5D01G439200.1 | Wheat | cytosol | 40.24 | 25.7 |
| CDX93476 | Canola | nucleus | 31.22 | 25.6 |
| KXG34475 | Sorghum | cytosol | 40.24 | 25.54 |
| TraesCS5B01G432900.2 | Wheat | extracellular | 40.24 | 25.46 |
| KRH06717 | Soybean | nucleus | 40.98 | 25.34 |
| CDY67303 | Canola | nucleus | 31.95 | 25.14 |
| CDX90116 | Canola | nucleus | 31.95 | 25.14 |
| CDX88661 | Canola | nucleus | 31.22 | 25.1 |
| HORVU5Hr1G104380.1 | Barley | plastid | 40.24 | 24.96 |
| Zm00001d007890_P002 | Maize | mitochondrion | 39.76 | 24.96 |
| CDY58572 | Canola | nucleus | 30.73 | 24.85 |
| CDY32718 | Canola | nucleus | 31.95 | 24.76 |
| CDY02802 | Canola | nucleus | 32.2 | 24.72 |
| HORVU4Hr1G072940.4 | Barley | cytosol | 43.41 | 23.99 |
| TraesCS4D01G273200.4 | Wheat | cytosol | 42.2 | 23.93 |
| Zm00001d048424_P003 | Maize | plastid | 43.17 | 23.92 |
| TraesCS4A01G031600.2 | Wheat | cytosol | 42.44 | 23.87 |
| CDY11758 | Canola | nucleus, plastid | 31.95 | 23.65 |
| TraesCS4B01G274500.2 | Wheat | plastid | 43.9 | 23.47 |
| Zm00001d018896_P002 | Maize | mitochondrion | 40.24 | 23.37 |
| HORVU5Hr1G104390.3 | Barley | plastid | 38.29 | 22.82 |
| CDY60520 | Canola | cytosol | 7.32 | 22.73 |
| Zm00001d027731_P012 | Maize | plastid | 44.39 | 22.66 |
| CDX93645 | Canola | nucleus | 31.46 | 21.08 |
| CDY43306 | Canola | cytosol | 30.98 | 20.72 |
Protein Annotations
| EnsemblPlants:CDY29972 | EnsemblPlantsGene:GSBRNA2T00044490001 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF56 | PFAM:PF04146 |
| PFscan:PS50882 | ProteinID:CDY29972 | ProteinID:CDY29972.1 | SEG:seg | UniParc:UPI0004EF4269 | UniProt:A0A078GXL8 |
| MapMan:16.5.2.1 | : | : | : | : | : |
Description
BnaC01g40360DBnaC01g40360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXL8]
Coordinates
chrLK032247:+:142575..144950
Molecular Weight (calculated)
45863.3 Da
IEP (calculated)
7.275
GRAVY (calculated)
-0.679
Length
410 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGTASSPDS LATGLSLLET ADLFQELSLG SEGSEVSRNR NKKGSLQHQY GNVPSGAFTA PSSHGRPNMN AGNLPNGGDL FGSYPWGYYP SNHPSGGYQD
101: QSFGYGLNSS SNTYSHLMNP NSSQEALSYD QFGYNDHMYS NNGLYGLYGN VIDSGHAYGT FGYDSWKLGR GWYPVDGYKK TRSFNYGRGY SEEKADRLNE
201: LCRGPRSSEG LYSTTKQDAP VVESFPETLV NAKFFVIKSY SEDDVHNSIK YGMWSSTPTG NKKLNAAYQE SSQECPVYLL FSVNASGQFV GVAEMIGAVD
301: FNKTMEYWQQ DKWIGCFPVK WRIIKDVPNS LLRHITLANN ENKPVTNSRD TQEVKLEDGI KIIKIFKEYT SKTCILDDFK FYETRQKIIR DKKIKQKKQV
401: LDGATVETIH
101: QSFGYGLNSS SNTYSHLMNP NSSQEALSYD QFGYNDHMYS NNGLYGLYGN VIDSGHAYGT FGYDSWKLGR GWYPVDGYKK TRSFNYGRGY SEEKADRLNE
201: LCRGPRSSEG LYSTTKQDAP VVESFPETLV NAKFFVIKSY SEDDVHNSIK YGMWSSTPTG NKKLNAAYQE SSQECPVYLL FSVNASGQFV GVAEMIGAVD
301: FNKTMEYWQQ DKWIGCFPVK WRIIKDVPNS LLRHITLANN ENKPVTNSRD TQEVKLEDGI KIIKIFKEYT SKTCILDDFK FYETRQKIIR DKKIKQKKQV
401: LDGATVETIH
001: MAGAASSDRL VTSFPLLDTA DLFQDLSLGS DANEVPMNFT KGSFQHPYGH APYGASSHGS ERRPNMNAGN LLNGGDSIGS YPWGYIPANY PSGGYPDPRF
101: GYDRNSNHSS FSHLMNPHSS QEVPSFDQLG YNDHLYSNHG LYGLYGNVID SGHAYGTFGY DSWKLGRGWY PVDGYRKTRS FNHGRGYSDE KADRLNELCR
201: GPRSSDFKNP QVLNSSMLDA MKQDVSAVDL QRYNGENFPE SFVKAKFFVI KSYSEDDVHN CIKYGAWSST PTGNKKLNAA YYEAKENSQE CPVYLLFSVN
301: ASGQFVGLAE MVGPVDFNKT MEYWQQDKWI GCFPVKWHII KDIPNSLLRH ITLANNENKP VTNSRDTQEV NLEHGTKIIK IFKEYMSKTC ILDDYKFYET
401: RQKIIRDKKI KQKKQALDGA SGETINLS
101: GYDRNSNHSS FSHLMNPHSS QEVPSFDQLG YNDHLYSNHG LYGLYGNVID SGHAYGTFGY DSWKLGRGWY PVDGYRKTRS FNHGRGYSDE KADRLNELCR
201: GPRSSDFKNP QVLNSSMLDA MKQDVSAVDL QRYNGENFPE SFVKAKFFVI KSYSEDDVHN CIKYGAWSST PTGNKKLNAA YYEAKENSQE CPVYLLFSVN
301: ASGQFVGLAE MVGPVDFNKT MEYWQQDKWI GCFPVKWHII KDIPNSLLRH ITLANNENKP VTNSRDTQEV NLEHGTKIIK IFKEYMSKTC ILDDYKFYET
401: RQKIIRDKKI KQKKQALDGA SGETINLS
Arabidopsis Description
ECT1AT3G03950 protein [Source:UniProtKB/TrEMBL;Acc:Q3MK94]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.