Factsheet for TraesCS4B01G274500.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
nucleus 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, vacuole
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G080500.2
TraesCS1A01G080600.1
TraesCS1A01G080700.1
TraesCS1B01G098600.1
TraesCS1B01G098700.2
TraesCS1D01G082200.1
TraesCS1D01G082500.1
TraesCS1D01G082600.1
TraesCS2A01G150600.2
TraesCS2B01G175800.2
TraesCS2D01G155700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13460.1	TraesCS1A01G080500.2	AT3G17510.1	16113215
AT3G13460.1	TraesCS1A01G080600.1	AT3G17510.1	16113215
AT3G13460.1	TraesCS1A01G080700.1	AT3G17510.1	16113215
AT3G13460.1	TraesCS1B01G098600.1	AT3G17510.1	16113215
AT3G13460.1	TraesCS1B01G098700.2	AT3G17510.1	16113215
AT3G13460.1	TraesCS1D01G082200.1	AT3G17510.1	16113215
AT3G13460.1	TraesCS1D01G082500.1	AT3G17510.1	16113215
AT3G13460.1	TraesCS1D01G082600.1	AT3G17510.1	16113215
AT3G13460.1	TraesCS2A01G150600.2	AT3G17510.1	16113215
AT3G13460.1	TraesCS2B01G175800.2	AT3G17510.1	16113215
AT3G13460.1	TraesCS2D01G155700.1	AT3G17510.1	16113215

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G273200.4	Wheat	cytosol	91.53	97.1
TraesCS4A01G031600.2	Wheat	cytosol	92.05	96.84
HORVU4Hr1G072940.4	Barley	cytosol	91.26	94.34
Os03t0158500-01	Rice	nucleus	74.84	81.19
KXG40139	Sorghum	plastid	71.06	76.65
Zm00001d048424_P003	Maize	plastid	67.28	69.73
Zm00001d027731_P012	Maize	plastid	69.75	66.63
TraesCS5B01G391500.1	Wheat	nucleus	44.59	51.66
KRH43005	Soybean	nucleus	47.46	51.49
KRH59123	Soybean	nucleus	47.2	51.13
GSMUA_Achr7P27220_001	Banana	cytosol	43.02	49.92
CDY57677	Canola	mitochondrion	11.08	49.71
VIT_06s0004g00200.t01	Wine grape	nucleus	45.24	49.22
VIT_08s0007g07450.t01	Wine grape	cytosol	44.33	48.99
GSMUA_Achr4P14820_001	Banana	cytosol	20.99	48.64
AT1G55500.5	Thale cress	cytosol	37.81	47.93
Solyc01g028860.2.1	Tomato	nucleus	43.94	47.73
CDY23602	Canola	nucleus	38.72	47.6
CDX82538	Canola	nucleus	39.37	47.19
Bra001506.1-P	Field mustard	nucleus	39.11	46.95
CDY43989	Canola	nucleus	38.59	46.69
AT3G13460.1	Thale cress	cytosol	40.55	46.63
Bra027432.1-P	Field mustard	nucleus	38.46	46.53
CDX75712	Canola	nucleus	38.33	46.37
Bra039400.1-P	Field mustard	nucleus	38.2	46.07
PGSC0003DMT400061684	Potato	endoplasmic reticulum, plasma membrane	44.2	46.06
CDY50448	Canola	cytosol	15.25	45.88
CDY07089	Canola	nucleus	37.81	45.6
CDY24182	Canola	nucleus	31.68	44.92
CDY21154	Canola	nucleus	23.73	44.72
Bra004105.1-P	Field mustard	nucleus	23.08	44.7
CDY07437	Canola	nucleus	24.51	44.66
CDY69959	Canola	nucleus	23.21	44.61
CDY50867	Canola	nucleus	23.21	44.5
CDY42891	Canola	nucleus	23.21	44.5
Bra036423.1-P	Field mustard	nucleus	23.47	44.34
Bra008509.1-P	Field mustard	cytosol	24.38	44.21
CDY39299	Canola	nucleus	24.38	44.21
CDX91541	Canola	mitochondrion	9.39	44.17
Bra031960.1-P	Field mustard	nucleus	22.69	43.94
CDY29972	Canola	nucleus	23.47	43.9
CDY56132	Canola	nucleus	25.55	43.85
CDY52966	Canola	cytosol	25.42	43.53
AT3G03950.3	Thale cress	cytosol	23.99	42.99
TraesCS5B01G433000.1	Wheat	cytosol	33.25	42.79
KRG94807	Soybean	nucleus	34.42	40.06
AT5G61020.1	Thale cress	cytosol	25.55	39.6
KRH06717	Soybean	nucleus	33.64	38.91
TraesCS5B01G432900.2	Wheat	extracellular	32.59	38.58
KRH70155	Soybean	nucleus	30.77	37.46
Bra018951.1-P	Field mustard	cytosol	12.13	35.91
Bra038524.1-P	Field mustard	cytosol	10.43	35.56
Bra014253.1-P	Field mustard	cytosol	13.69	35.23
TraesCS7B01G174500.1	Wheat	nucleus	26.73	34.22
TraesCS1B01G057800.3	Wheat	nucleus	27.9	33.33
TraesCS7B01G182100.2	Wheat	cytosol	24.38	31.59
TraesCS3B01G301100.1	Wheat	nucleus	25.29	28.2
TraesCS4B01G179100.3	Wheat	cytosol, nucleus, plastid	24.51	26.33
TraesCS3B01G232300.2	Wheat	cytosol	21.77	24.31
TraesCS2B01G010200.1	Wheat	cytosol	22.16	23.81
TraesCS1B01G128700.1	Wheat	cytosol	18.12	19.77

Protein Annotations

EnsemblPlants:TraesCS4B01G274500.2	EnsemblPlantsGene:TraesCS4B01G274500	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF30	PFAM:PF04146
PFscan:PS50882	SEG:seg	MapMan:16.5.2.1	:	:	:

Description

No Description!

Coordinates

chr4B:-:552029826..552033714

Molecular Weight (calculated)

82081.5 Da

IEP (calculated)

8.123

GRAVY (calculated)

-0.674

Length

767 amino acids

Sequence
(BLAST)

001: MAVVAPTPAP PAAPAPAAAA AAPAPALAPA PAADQATDLL QKMSLESQPK AAADGTELAG ATKQGPVASQ PLSVSIPQDR SITPVVQDFT DPNMFYLPAY
101: YYGELGLPGY DGTMSEWDEY TRYVNQDGVE VTPAVYGDIY GYGYAPYGAY SPASSPVPTV DGQMFAAQHY QYPAYYQPPT PIPSTTQGDQ QPSANADNKP
201: AAKADAAKTT TNGVPNVSAQ SNSATAPLGS SYQNSSLTPD GTYRAPLLGG VPSTGYVDST YGYDTTGAHY AWYDGSAYTN AQQRPTTANY TPSSAYNSNG
301: SSARYQTKSP TPQQTGNRRP TTTTGSATPT YPNRMYSSTQ SYNQYGNSVK TGLMYGNTGY GSTGYGSSGY GSNGYGSSGY GSSGYGSSGY DSRLYGRWGV
401: SMDTRYNRPR GRGNGYYGFG NESQDGTIEL NRGPRSGRFK NQKAFGHTVT IAVKGQTLPS SENKDASDIP DKAQFNLEDF PVQYDDAKFF VIKSYSEDDI
501: HKSIKYNVWA STTNGNKKLD AAYQEAQAKG SSCPIFLFFS VNTSGQFVGV AEMTGPVDFE KTLEFWQQDK WNGSFSVKWH IVKDVPNNIL KHIVLENNEG
601: KPVTNSRDTQ DINLEQGIQM LKIFKEHVSK TSILEDFAFY ENRQKLMQEK RIKQQQIQKQ VWDSRAPNPV AGEKQQELAN GKPKVSLPNG VNGEKQQDAV
701: NGKPKSPVAN GVNGDAKVPA EKAAAAAPPA VTYAAKVAQT AAAEKKPVAT EKKPVVANGA VKTGVAA

Best Arabidopsis Sequence Match ( AT1G55500.2 )
(BLAST)

001: MSTVAPPADQ AADVLKKLSL DSKSRTLEIP EPTKKTGVYQ YGAMDSNGQV PSFDRSLSPM LPSDALDPSV FYVPNVYQQP YYYGYGSDYT GYTNSESVDM
101: TSGAYGENAS LVYPQGYGYA AFPYSPATSP APQLGGDGQL YGAQQYQYPF PLTASSGPFA SSVPASTQSK LSTNKAANSA SAGIPKGMNG SAPVKPLNQS
201: ALYGNSALGG GLAAGYQDPR YSYDGFYTPV SWHDGSNFSD VQRSVSGSGV ASSYSKANNN VPATRNQNSS SNSHYTSMYQ PASMTGYAAQ GYYDRVSPNK
301: SYGQYGSTVR SGMGYGSSGY GSRTNERGWL NTDNKYRSRG RGNSYFYGNE NIDGLNELNR GPRAKGTKAT EEVSSEEVKK QTFDESNTEE TVTCVLPDRE
401: ECNRDDFPVE YKDAKFFIIK SYSEDDVHKS IKYNVWASTP NGNKKLDAAY QEAQQKSSGC PVFLFFSVNA SGQFIGLAEM KGPVDFNKNI EYWQQDKWTG
501: SFPLKWHILK DVPNSLLKHI TLEYNENKPV TNSRDTQEVK LEQGLKVVKI FKEHNSKTCI LDDFSFYEAR QKTILEKKAK QQQSQKQARE ENGLGRKNQ

Arabidopsis Description

ECT4evolutionarily conserved C-terminal region 4 [Source:TAIR;Acc:AT1G55500]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.