CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
plastid 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
EER97615
EES00612
OQU77359

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13460.1	EER97615	AT3G17510.1	16113215
AT3G13460.1	EES00612	AT3G17510.1	16113215
AT3G13460.1	OQU77359	AT3G17510.1	16113215

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048424_P003	Maize	plastid	87.06	83.65
Os03t0158500-01	Rice	nucleus	81.58	82.04
Zm00001d027731_P012	Maize	plastid	90.58	80.2
HORVU4Hr1G072940.4	Barley	cytosol	74.68	71.56
TraesCS4D01G273200.4	Wheat	cytosol	72.57	71.37
TraesCS4B01G274500.2	Wheat	plastid	76.65	71.06
TraesCS4A01G031600.2	Wheat	cytosol	72.43	70.64
EER93461	Sorghum	nucleus	48.95	52.81
CDY57677	Canola	mitochondrion	12.1	50.29
GSMUA_Achr7P27220_001	Banana	cytosol	46.69	50.23
VIT_06s0004g00200.t01	Wine grape	nucleus	49.79	50.21
KRH43005	Soybean	nucleus	49.79	50.07
AT1G55500.5	Thale cress	cytosol	42.19	49.59
GSMUA_Achr4P14820_001	Banana	cytosol	23.07	49.55
KRH59123	Soybean	nucleus	49.09	49.29
Solyc01g028860.2.1	Tomato	nucleus	48.8	49.15
CDY23602	Canola	nucleus	43.04	49.04
CDY43989	Canola	nucleus	43.6	48.9
Bra027432.1-P	Field mustard	nucleus	43.32	48.58
VIT_08s0007g07450.t01	Wine grape	cytosol	47.26	48.41
CDX82538	Canola	nucleus	43.46	48.28
AT3G13460.1	Thale cress	cytosol	45.29	48.28
Bra001506.1-P	Field mustard	nucleus	43.18	48.04
Bra039400.1-P	Field mustard	nucleus	42.9	47.96
CDY07089	Canola	nucleus	42.48	47.48
CDX75712	Canola	nucleus	42.33	47.48
PGSC0003DMT400061684	Potato	endoplasmic reticulum, plasma membrane	48.52	46.88
CDY24182	Canola	nucleus	35.58	46.77
CDY07437	Canola	nucleus	27.43	46.32
CDY50448	Canola	cytosol	16.6	46.27
Bra004105.1-P	Field mustard	nucleus	25.6	45.96
CDY39299	Canola	nucleus	27.29	45.86
CDY21154	Canola	nucleus	26.16	45.7
CDY69959	Canola	nucleus	25.6	45.61
CDY50867	Canola	nucleus	25.6	45.5
CDY42891	Canola	nucleus	25.6	45.5
Bra036423.1-P	Field mustard	nucleus	25.88	45.32
Bra031960.1-P	Field mustard	nucleus	25.18	45.2
CDY56132	Canola	nucleus	28.13	44.74
Bra008509.1-P	Field mustard	cytosol	26.58	44.68
CDY52966	Canola	cytosol	28.13	44.64
CDY29972	Canola	nucleus	25.74	44.63
CDX91541	Canola	mitochondrion	10.13	44.17
AT3G03950.3	Thale cress	cytosol	26.58	44.16
EER93313	Sorghum	cytosol	34.18	42.48
KRG94807	Soybean	nucleus	37.27	40.21
AT5G61020.1	Thale cress	cytosol	27.99	40.2
KRH06717	Soybean	nucleus	36.57	39.22
KRH70155	Soybean	nucleus	34.04	38.41
KXG34475	Sorghum	cytosol	34.88	38.39
Bra018951.1-P	Field mustard	cytosol	13.22	36.29
Bra014253.1-P	Field mustard	cytosol	14.91	35.57
Bra038524.1-P	Field mustard	cytosol	11.25	35.56
KXG27074	Sorghum	cytosol	26.58	34.24
EES14722	Sorghum	nucleus	27.85	33.33
KXG25412	Sorghum	cytosol	29.54	32.86
OQU87332	Sorghum	mitochondrion, nucleus	27.0	28.61
KXG21015	Sorghum	nucleus	24.61	26.8
KXG24185	Sorghum	nucleus	21.66	21.01
OQU77486	Sorghum	cytosol	20.39	20.48

Protein Annotations

EnsemblPlants:KXG40139	EnsemblPlantsGene:SORBI_3001G498200	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF30	PFAM:PF04146
PFscan:PS50882	ProteinID:KXG40139	ProteinID:KXG40139.1	SEG:seg	UniParc:UPI00081AE3D9	UniProt:A0A1B6QQE7
MapMan:16.5.2.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:76810098..76814761

Molecular Weight (calculated)

76810.8 Da

IEP (calculated)

8.694

GRAVY (calculated)

-0.662

Length

711 amino acids

Sequence
(BLAST)

001: MAAVAPPPAP APAAPAPAAA AAAAPAPAPA TVPVADQTTD LLQKLSLDPQ PKAADATEPT AAAKKGAVTS QPLSVAIPPE RSITPVLQDF MDPNLFYLPA
101: YYYGGYDSSM SEWDDYPRYL NSDGVEIAPA VYGDIYGYGY APYGAYSPAT SPAPTVDGQM FGAQHYQYPT AYFQPPTPVP STTQSDLQSS NNTEKPAAKA
201: DPAKTTANGV PNGTAHSNSG TVPLASSQQN SSLTPDGTYR APLLGGVPSA GYLDMTYGYD STGAHFAWYD GSAYANGQQR TTTTNHYPSS TFSGNGSSAR
301: NQNKSSTTPQ MQGMQNRRPT TTSATPTYTN RMYPSSRPYT QYGNSIKTGL PYGSNGYDSR IYGRWGVGMD NRYRPRGRNG YYGYGNESQD GTIELNRGPR
401: SGRFKNQKLY GHTVTIAVKG QSLPSGESKN DSAVPDRAQF NRDDFPVQYD AAKFFVIKSY SEDDIHKSVK YNVWASTTNG NKKLDAAYQE AQSKGSACPI
501: FLFFSVNTSG QFVGVAEMTG AVDFEKTLEY WQQDKWNGSF SVKWHIVKDV PNNILKHIIL ENNENKPVTN SRDTQEIHLE QGLQMLKIFK DHVSKTSILD
601: DFTFYESRQK LMQDKRSKQQ QVQKQVWDSR TPISVTSEQQ QEAANGKPNP SDVPNGVTAE VKAVKAPAEK PVLANGVTNG VTTTPAVSYA AKVAQTATGK
701: PILANGVAKT G

Best Arabidopsis Sequence Match ( AT3G13460.1 )
(BLAST)

001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC

Arabidopsis Description

ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.