CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049729_P008	Maize	cytosol	86.77	88.33
Zm00001d034996_P005	Maize	cytosol	80.63	85.9
TraesCS3A01G199100.2	Wheat	cytosol	59.07	62.84
TraesCS3D01G199400.2	Wheat	cytosol	58.66	62.5
TraesCS3B01G232300.2	Wheat	cytosol	58.53	62.45
HORVU3Hr1G045890.2	Barley	endoplasmic reticulum, peroxisome, plasma membrane	54.16	60.7
Os01t0329800-01	Rice	cytosol	56.89	58.9
OQU77486	Sorghum	cytosol	34.65	35.88
KRH36908	Soybean	cytosol	20.87	34.46
Bra018708.1-P	Field mustard	nucleus	24.01	28.95
CDX93645	Canola	nucleus	24.15	28.92
CDY43306	Canola	cytosol	23.87	28.55
AT1G48110.2	Thale cress	nucleus	24.15	27.7
AT3G17330.1	Thale cress	nucleus	22.1	27.23
KRH02430	Soybean	cytosol	25.65	27.09
KRH50636	Soybean	cytosol	25.38	26.76
VIT_05s0020g00460.t01	Wine grape	cytosol	25.78	26.47
Solyc12g099090.1.1	Tomato	cytosol	24.15	25.65
PGSC0003DMT400011739	Potato	cytosol	24.15	25.32
KRH11876	Soybean	endoplasmic reticulum	24.15	25.25
EER93313	Sorghum	cytosol	19.65	25.17
KXG27074	Sorghum	cytosol	18.69	24.82
EER93461	Sorghum	nucleus	21.56	23.98
KXG25412	Sorghum	cytosol	20.6	23.63
EES14722	Sorghum	nucleus	18.69	23.06
KXG34475	Sorghum	cytosol	20.19	22.91
OQU87332	Sorghum	mitochondrion, nucleus	19.92	21.76
KXG40139	Sorghum	plastid	21.01	21.66
KXG21015	Sorghum	nucleus	17.19	19.3

Protein Annotations

EnsemblPlants:KXG24185	EnsemblPlantsGene:SORBI_3007G005500	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF26	PFAM:PF04146
PFscan:PS50882	ProteinID:KXG24185	ProteinID:KXG24185.1	ProteinID:KXG24186.1	SEG:seg	UniParc:UPI0003C68216
UniProt:A0A1B6PF63	MapMan:16.5.2.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:475260..480608

Molecular Weight (calculated)

80039.8 Da

IEP (calculated)

7.471

GRAVY (calculated)

-0.557

Length

733 amino acids

Sequence
(BLAST)

001: MEMGMTPEVM YGQNVFVPAT ANPYQYGYAE VGSPMEWYNH PSSLGYDGQD VYYPAEGMQC VYYAAPDNGS MHPTYSPYPS DPSFVPDGSF MPQEYVADPA
101: NSTCQIAPTS YYIPAVLPYA QDSVPGSATT PIHSSNVAFL PGIPGYAATS ANAAFPLIAP VTTKRDIVMH PPVQSTIVPS KQFQDHAKPP KVQLHNSVPQ
201: KQELPDRCMV PAKLPHVSQV SAHLSGNNCL GCAAGSDLQK WAAAEKFQPS SKSSGHLNGT GQKVHSLVDS EKPSNQSSAI IVKSYTSRLP VGNPDGTIII
301: RTDQYNRDDL RIDYTYAKFF VIKSIGEADV HKSIKYGVWS SSSNGNSKLD SAFRDADRIS RRHSTKCPVF LFFSVNGSGH FCGMAEMVGP VDFHKDMDFW
401: CQDKWTGCFP VRWHIVKDIQ NCSLQHITLQ NNENKPVTHS RDTQEIPYLP GISMIEIFKG IKARFCLFDD FMRYETDEAR KKPHRRCKLS YNAPDFVPVS
501: QRTKDASDTQ QTKSSSVLVD KTSEVQNVAE KQHDAKVIKP QEPCVSEKQA SEAEKENGVQ ESHCSGNHNQ SHDDAAKNVT NHPPASSLKA GAEGKQQYWK
601: KVENPKQHAD SSAAAQGSLR APEKRLNGVS GSVRAVPEGG EEQRVTAKLG SLKISSKAVE ADHKTSTVGV EKRLNGVSSS VSTVPEGGEE QRVTAKLGSL
701: KVGSKAVEAD RKTNTVGVVT IGSMPVRVDS CDV

Best Arabidopsis Sequence Match ( AT1G48110.1 )
(BLAST)

001: MYTSEAAPDF VVDQGMYYPV DASYGYYCTG YESPGDWENH QMFFGVDGSE VQYTGGQNEN SPYICYTPSY GYAQSPYNPF NPYIPGASIG VDSAFVAPQQ
101: FYSIPPYQSV ATSPTFVPYA IQPEIVSNSS TNSLVETGSA NRGRSDGRGS RQRSGTATAG LQRNDPKLPA GNSLGKISEK PRPNSGQSRQ SEMDKSDSTS
201: SSGQARQGRV TSVSAQPVDV VSSSRVSSFR QLDIAPPQLN DFSKIATNNN NIRPKLYGGH ANIIPDTVRE QNRGRRSRAL GNQLIVKAYT TKAGNADAEG
301: NIVINPSQYN KEDLRIDYSN AKFFVIKSYS EDDVHKSIKY NVWSSTLHGN KKLQSAYEDA QRIATEKSCE CPIFLFFSVN ASGLFCGMAE MTGPVSFDKD
401: MDFWQQDKWS GSFPVKWHII KDVPNSYFRH IILQNNENKP VTNSRDTQEI MLKQGLEVLK IFKDHMERTS LLDDFVYYES RQRVMQDERT RLPYRTFLND
501: LPLPRPDLSD RNKKTPLESF KKPSVISAKT EELPSKSEGN EETTVKEGNE EDTSSTQKKI SSLTIDPSGT DSNPTTVSHL NQKSQAKSKP NSSGSLKKTD
601: PSEVVDASLS DKNDSFKVTG SPAILTVGTI PLDPKSLQK

Arabidopsis Description

ECT7evolutionarily conserved C-terminal region 7 [Source:TAIR;Acc:AT1G48110]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.