CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94087

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79270.1	EER94087	AT1G03900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011602_P001	Maize	nucleus	78.99	87.03
Zm00001d043860_P001	Maize	mitochondrion	85.1	84.59
Os01t0679900-01	Rice	nucleus	67.96	74.88
TraesCS3B01G301100.1	Wheat	nucleus	67.66	65.99
TraesCS3D01G267900.1	Wheat	nucleus	66.92	65.26
TraesCS3A01G267700.1	Wheat	nucleus	66.62	64.69
HORVU3Hr1G062620.8	Barley	mitochondrion	67.06	58.06
GSMUA_Achr9P06180_001	Banana	endoplasmic reticulum, plasma membrane	39.49	42.81
Bra008406.1-P	Field mustard	cytosol	28.46	42.63
CDX88524	Canola	cytosol	28.02	42.53
GSMUA_Achr6P26690_001	Banana	cytosol	38.6	42.53
Bra035104.1-P	Field mustard	cytosol	28.02	42.44
CDY56809	Canola	cytosol	28.32	42.41
CDX87395	Canola	cytosol	28.02	42.34
KRH43645	Soybean	nucleus	36.51	42.31
CDY22270	Canola	cytosol	28.17	42.19
VIT_19s0085g01100.t01	Wine grape	nucleus	37.11	42.13
KRH13810	Soybean	nucleus, plastid	35.62	41.42
CDX68000	Canola	nucleus	29.96	39.49
Bra003615.1-P	Field mustard	nucleus	29.96	39.49
CDX79309	Canola	nucleus	29.66	39.1
AT1G79270.1	Thale cress	nucleus	30.25	38.45
KXG27074	Sorghum	cytosol	24.89	30.25
EER93313	Sorghum	cytosol	25.63	30.07
EES14722	Sorghum	nucleus	26.23	29.63
EER93461	Sorghum	nucleus	28.91	29.44
KXG25412	Sorghum	cytosol	27.12	28.48
KXG34475	Sorghum	cytosol	26.23	27.24
KXG40139	Sorghum	plastid	28.61	27.0
KXG21015	Sorghum	nucleus	23.1	23.74
KXG24185	Sorghum	nucleus	21.76	19.92
OQU77486	Sorghum	cytosol	20.27	19.21

Protein Annotations

EnsemblPlants:OQU87332	EnsemblPlantsGene:SORBI_3003G257100	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF58
PFAM:PF04146	PFscan:PS50882	ProteinID:OQU87332	ProteinID:OQU87332.1	SEG:seg	UniParc:UPI0009DC8588
UniProt:A0A1W0VYZ6	MapMan:16.5.2.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:59529078..59534732

Molecular Weight (calculated)

73438.3 Da

IEP (calculated)

7.759

GRAVY (calculated)

-0.636

Length

671 amino acids

Sequence
(BLAST)

001: MAQNKKAMSR DSQRIPVVQS YSCRVGYNAK VLEDTRSNAG FFCGELWCGL MEPKGELAQK PIEEAIDGLK IDASTKASNV NLPAKKDASS SDAVSCISSG
101: DAASTVKETE MNQETYFGDQ GMYYYGYYYP GSYGGLDENG NFVGYNGLEV HPAVVQADNG SYLCHLPGYE NGYASYSPVV PGGIASVDGQ YVSKEQYYST
201: AIPLQDLSTP GIFAQPIAYG TELVPAYSWD PSFVLLDGVQ GHPVGVHQTN YAARPKYSSN KHAIPSSKAA RSAKPAADTV KGSSSGLETV ANAANSSPSS
301: KGANKASGAS ITKGYLPSSK FVMHSNNQGK ISVYQSKGIN VKESGRSWNN GEKLKMRSKL NGHGDSESNE NNHTDNSKHS LSPQSDVGLP SSGGANASIP
401: SHVAISKNAY NLSDFVTKYE QALFFVIKSY SEDDIHKSIK YNVWASTPNG NKRLDSAYRL AQERMAEKGT KCPVFLFFSV NASGQFCGVA EMVGPVDFNR
501: NMNFWQQDKW NGFFSVKWHI IKDVPNPQFR HIILENNENK PVTNSRDTQE VKFSQGTEML NIFKNFACKT SILDDFDFYE NRQKVMQDRR GKPLTTLFDH
601: PLPKAEKTAE IKRQTHATEF GRAKSNEGQG NNVGVVHDTT KKNEEQSNNV SEVVDAACSN KEQPNKVATQ C

Best Arabidopsis Sequence Match ( AT1G79270.3 )
(BLAST)

001: MVKNLKVDPL AKVTASTTSM VSAKENKNQS EAEPSYYETL ETYQGLPCPY GGYYGYYYPG LDGSVGEAKD NGYYGYGTEV QYPVMQGENG SVIYLMPGFQ
101: SYDASQTYMP INPVGVSSQA LHSPMYAAQG YYQNQFGYAD VSSPTYLWDP VGDRYVYGVA SYTPPLKQNI SSSSHNHNNY YSKSKNSFTG HGMGDRPKTP
201: RKASQNSYAP PPLLNQEKGR IAYPMDPVKK KSGALNRDET EKAKARTKEN GTSMNDLANG QDHITNGECE SCSLDAEGNE RSNGVGSVIR RDQYNLPSFQ
301: TKYEEAIFFV IKSYSEDDIH KSIKYNVWSS TLNGNKKLDS AYQESQKKAA DKSGKCPVFL FFSVNASGQF CGVAEMIGRV DYEKSMEFWQ QDKWTGYFPV
401: KWHIIKDVPN PQLRHIILEN NENKPVTNSR DTQEVRLPQG NEVLNIFKNY AAKTSILDDF DFYENREKVM VQKKLRFPPV LKKKEEDLVA DFKTMEMSNT
501: VEEGNTELTG TVS

Arabidopsis Description

ECT8Evolutionarily conserved C-terminal region 8 [Source:UniProtKB/TrEMBL;Acc:Q9FPE7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.