Factsheet for GSMUA_Achr9P06180_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

plastid 1
plasma membrane 6
extracellular 4
endoplasmic reticulum 5
vacuole 4
golgi 4
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P03850_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79270.1	GSMUA_Achr5P03850_001	AT1G03900.1	21798944
AT1G79270.1	GSMUA_AchrUn_...	AT1G03900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P26690_001	Banana	cytosol	73.18	74.38
VIT_19s0085g01100.t01	Wine grape	nucleus	50.08	52.45
KRH13810	Soybean	nucleus, plastid	46.69	50.09
KRH43645	Soybean	nucleus	46.2	49.4
Bra035104.1-P	Field mustard	cytosol	34.25	47.86
Bra008406.1-P	Field mustard	cytosol	34.57	47.77
CDY56809	Canola	cytosol	34.57	47.77
CDY22270	Canola	cytosol	34.09	47.1
CDX88524	Canola	cytosol	33.6	47.06
CDX87395	Canola	cytosol	33.6	46.85
Bra003615.1-P	Field mustard	nucleus	37.0	44.99
CDX68000	Canola	nucleus	37.0	44.99
Os01t0679900-01	Rice	nucleus	44.1	44.83
CDX79309	Canola	nucleus	36.83	44.79
AT1G79270.1	Thale cress	nucleus	37.96	44.51
Zm00001d011602_P001	Maize	nucleus	42.65	43.35
TraesCS3D01G267900.1	Wheat	nucleus	44.91	40.41
TraesCS3B01G301100.1	Wheat	nucleus	44.75	40.26
GSMUA_Achr6P12810_001	Banana	nucleus	22.62	39.77
TraesCS3A01G267700.1	Wheat	nucleus	44.26	39.65
OQU87332	Sorghum	mitochondrion, nucleus	42.81	39.49
GSMUA_Achr4P14820_001	Banana	cytosol	20.19	37.76
Zm00001d043860_P001	Maize	mitochondrion	41.03	37.63
HORVU3Hr1G062620.8	Barley	mitochondrion	45.4	36.26
GSMUA_Achr1P10560_001	Banana	nucleus	24.07	33.48
GSMUA_Achr7P01490_001	Banana	nucleus	29.73	32.86
GSMUA_Achr4P22630_001	Banana	nucleus	31.66	31.56
GSMUA_Achr5P02830_001	Banana	cytosol	30.69	30.84
GSMUA_Achr4P21380_001	Banana	nucleus	32.47	30.55
GSMUA_Achr4P12480_001	Banana	cytosol	28.43	30.29
GSMUA_Achr4P28430_001	Banana	nucleus, plastid	29.73	29.92
GSMUA_Achr7P27220_001	Banana	cytosol	31.66	29.65
GSMUA_Achr4P11560_001	Banana	nucleus	29.89	28.51
GSMUA_Achr4P04600_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	29.08	23.35
GSMUA_Achr1P24980_001	Banana	nucleus	30.21	22.53
GSMUA_Achr8P29890_001	Banana	cytosol	28.92	22.07

Protein Annotations

EnsemblPlants:GSMUA_Achr9P06180_001	EnsemblPlants:GSMUA_Achr9T06180_001	EnsemblPlantsGene:GSMUA_Achr9G06180_001	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR007275
InterPro:YTH_domain	ncoils:Coil	PANTHER:PTHR12357	PANTHER:PTHR12357:SF58	PFAM:PF04146	PFscan:PS50882
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002951BE6	UniProt:M0TXX7	MapMan:16.5.2.1	:

Description

YT521-B-like family domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G06180_001]

Coordinates

chr9:-:3962686..3968620

Molecular Weight (calculated)

68855.4 Da

IEP (calculated)

6.456

GRAVY (calculated)

-0.566

Length

619 amino acids

Sequence
(BLAST)

001: MQSRGSSCYL VRSIFSSLIF FILELFTLTF HDPAIEDALK KLKIDLPAKV NCINTSGPKG GSQYDSTSCI SSGDAGSSTK ESEVDQEPLV GEQGMYYYGY
101: YYPGSTGLMG EWDDQYYIQG SDSLQVQHPA VQAENGSFVY YFPGYQAGYT PYSPVLPGAI YGVDGQFLSQ GSYYPSSVSP QTLVSPGVLP QPVAYGPELV
201: PAYPWDPSFF FTDEIQGSIS VDPTNPHYKP NLTSHAHTRA LSKTIPTSKS VLGTKGSSLA SDVSHPITVQ NQAHKPVKKG AAAVLSKGYV PISKFNVYAN
301: QGKGELLCSK SAINLKENGR SWIDDEKLKV KNKLNSHGDF DLLNEQNRGP RTNGSRSSSQ SGVDPLEALG AEKNDSGSIS SDIVNKDEYN RPDFQTKYEH
401: ALFFVIKSYS EDDIHKSIKY NVWASTPNGN KRLDNAFQVA QEKMAEKNSK CPVFLFFSVN ASGQFCGVAE MTGRVDFSKD MDFWQQDKWN GFFPVKWHII
501: KDVPNPQFRH IILENNDNKP VTNSRDTQEV KFSQGTEMLS IFKSYSFKTS ILDDFGFYEN RQKVMQEKRN RPNTPSLVNS LPRNNEPIEV PKIDDSKSKT
601: PNLVLIEVED HQTGIPTSK

Best Arabidopsis Sequence Match ( AT1G79270.1 )
(BLAST)

001: MTSHVPKHPR KSFEDMVKNL KVDPLAKVTA STTSMVSAKE NKNQSEAEPS YYETLETYQG LPCPYGGYYG YYYPGLDGSV GEAKDNGYYG YGTEVQYPVM
101: QGENGSVIYL MPGFQSYDAS QTYMPINPVG VSSQALHSPM YAAQGYYQNQ FGYADVSSPT YLWDPVGDRY VYGVASYTPP LKQNISSSSH NHNNYYSKSK
201: NSFTGHGMGD RPKTPRKASQ NSYAPPPLLN QEKGRIAYPM DPVKKKSGAL NRDETEKAKA RTKENGTSMN DLANGQDHIT NGECESCSLD AEGNERSNGV
301: GSVIRRDQYN LPSFQTKYEE AIFFVIKSYS EDDIHKSIKY NVWSSTLNGN KKLDSAYQES QKKAADKSGK CPVFLFFSVN ASGQFCGVAE MIGRVDYEKS
401: MEFWQQDKWT GYFPVKWHII KDVPNPQLRH IILENNENKP VTNSRDTQEV RLPQGNEVLN IFKNYAAKTS ILDDFDFYEN REKVMVQKKL RFPPVLKKKE
501: EDLVADFKTM EMSNTVEEGN TELTGTVS

Arabidopsis Description

ECT8Evolutionarily conserved C-terminal region 8 [Source:UniProtKB/TrEMBL;Acc:Q9FPE7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.