Factsheet for Bra003615.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra015277.1-P
Bra030548.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79270.1	Bra015277.1-P	AT1G03900.1	21798944
AT1G79270.1	Bra030548.1-P	AT1G03900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68000	Canola	nucleus	98.43	98.43
CDX79309	Canola	nucleus	96.27	96.27
Bra008406.1-P	Field mustard	cytosol	75.83	86.16
Bra035104.1-P	Field mustard	cytosol	74.46	85.55
AT1G79270.1	Thale cress	nucleus	83.3	80.3
KRH43645	Soybean	nucleus	48.72	42.83
KRH13810	Soybean	nucleus, plastid	48.33	42.63
VIT_19s0085g01100.t01	Wine grape	nucleus	49.12	42.3
GSMUA_Achr9P06180_001	Banana	endoplasmic reticulum, plasma membrane	44.99	37.0
GSMUA_Achr6P26690_001	Banana	cytosol	42.83	35.8
Bra004105.1-P	Field mustard	nucleus	27.11	34.85
Os01t0679900-01	Rice	nucleus	40.47	33.83
Bra031960.1-P	Field mustard	nucleus	26.13	33.59
Zm00001d011602_P001	Maize	nucleus	39.49	33.0
Bra008509.1-P	Field mustard	cytosol	27.31	32.86
Bra018951.1-P	Field mustard	cytosol	16.11	31.66
Bra036423.1-P	Field mustard	nucleus	25.15	31.53
TraesCS3B01G301100.1	Wheat	nucleus	41.85	30.96
Bra014253.1-P	Field mustard	cytosol	18.07	30.87
TraesCS3D01G267900.1	Wheat	nucleus	41.26	30.52
Bra038524.1-P	Field mustard	cytosol	13.36	30.22
TraesCS3A01G267700.1	Wheat	nucleus	40.86	30.1
OQU87332	Sorghum	mitochondrion, nucleus	39.49	29.96
Zm00001d043860_P001	Maize	mitochondrion	38.7	29.19
Bra019988.1-P	Field mustard	nucleus	27.31	27.74
Bra006780.1-P	Field mustard	cytosol	27.7	27.7
Bra034710.1-P	Field mustard	nucleus	32.02	27.44
Bra039400.1-P	Field mustard	nucleus	33.99	27.2
Bra039366.1-P	Field mustard	nucleus	31.83	26.96
HORVU3Hr1G062620.8	Barley	mitochondrion	40.08	26.32
Bra027432.1-P	Field mustard	nucleus	32.61	26.18
Bra018708.1-P	Field mustard	nucleus	31.24	26.15
Bra010911.1-P	Field mustard	nucleus	26.33	25.72
Bra001506.1-P	Field mustard	nucleus	32.22	25.67
Bra020382.1-P	Field mustard	nucleus	27.7	25.5

Protein Annotations

EnsemblPlants:Bra003615.1	EnsemblPlants:Bra003615.1-P	EnsemblPlantsGene:Bra003615	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF56
PFAM:PF04146	PFscan:PS50882	SEG:seg	UniParc:UPI00025413E0	UniProt:M4CHD2	MapMan:16.5.2.1

Description

AT1G79270 (E=2e-210) ECT8 | ECT8 (evolutionarily conserved C-terminal region 8)

Coordinates

chrA07:-:14085327..14087705

Molecular Weight (calculated)

57403.7 Da

IEP (calculated)

5.940

GRAVY (calculated)

-0.834

Length

509 amino acids

Sequence
(BLAST)

001: MTSHVPKHPR EPTEDMVKNL KVDPLAKVAA STTSTKNQSE PYYETLETYQ GLPCPYGGYY GFYYPSVDGS LGEAKDNGYY GYGTDVQYPV MQGENGSLIY
101: MMPGFQSYDV SPTYMPISPA GVSSQALNSP MYAAQGYYQN QYGYGNVSSP TYLWDPVGEN YVYGVASNNQ SMKQNISSSS SHNYSNYYSK SKTSFTGHGM
201: GGRPRTPQKS SYAPLPPHNQ ERGGPLKKKY GASNRDETEK LKARNKENGS SVSENVQEDG ECESCLLDGE GKGRSNGVGY VIKRDQYNLP SFQTKYEEAM
301: FFVIKSYSED DIHKSIKYNV WSSTLNGNKK LDSAYQESQK KVAEKGGTCP VFLFFSVNAS GQFCGVAEMT GRVDYEKSME FWQQDKWTGY FPVKWHIIKD
401: VPNPQLRHVI LENNENKPVT NSRDTQEVRL PQGNEVLNIF KNYAAKTSIL DDFDFYENRE RVMVQKKLRF NPVSKKQEDD LVADMQTMEI SDTVKEENTD
501: IIGTLDSLK

Best Arabidopsis Sequence Match ( AT1G79270.1 )
(BLAST)

001: MTSHVPKHPR KSFEDMVKNL KVDPLAKVTA STTSMVSAKE NKNQSEAEPS YYETLETYQG LPCPYGGYYG YYYPGLDGSV GEAKDNGYYG YGTEVQYPVM
101: QGENGSVIYL MPGFQSYDAS QTYMPINPVG VSSQALHSPM YAAQGYYQNQ FGYADVSSPT YLWDPVGDRY VYGVASYTPP LKQNISSSSH NHNNYYSKSK
201: NSFTGHGMGD RPKTPRKASQ NSYAPPPLLN QEKGRIAYPM DPVKKKSGAL NRDETEKAKA RTKENGTSMN DLANGQDHIT NGECESCSLD AEGNERSNGV
301: GSVIRRDQYN LPSFQTKYEE AIFFVIKSYS EDDIHKSIKY NVWSSTLNGN KKLDSAYQES QKKAADKSGK CPVFLFFSVN ASGQFCGVAE MIGRVDYEKS
401: MEFWQQDKWT GYFPVKWHII KDVPNPQLRH IILENNENKP VTNSRDTQEV RLPQGNEVLN IFKNYAAKTS ILDDFDFYEN REKVMVQKKL RFPPVLKKKE
501: EDLVADFKTM EMSNTVEEGN TELTGTVS

Arabidopsis Description

ECT8Evolutionarily conserved C-terminal region 8 [Source:UniProtKB/TrEMBL;Acc:Q9FPE7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.