Factsheet for TraesCS3D01G267900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G153300.1
TraesCS1B01G171600.1
TraesCS1D01G151800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79270.1	TraesCS1A01G153300.1	AT1G03900.1	21798944
AT1G79270.1	TraesCS1B01G171600.1	AT1G03900.1	21798944
AT1G79270.1	TraesCS1D01G151800.1	AT1G03900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G301100.1	Wheat	nucleus	97.67	97.67
TraesCS3A01G267700.1	Wheat	nucleus	91.28	90.88
HORVU3Hr1G062620.8	Barley	mitochondrion	87.94	78.06
Os01t0679900-01	Rice	nucleus	65.41	73.89
Zm00001d011602_P001	Maize	nucleus	63.08	71.26
OQU87332	Sorghum	mitochondrion, nucleus	65.26	66.92
Zm00001d043860_P001	Maize	mitochondrion	62.65	63.85
Bra035104.1-P	Field mustard	cytosol	29.22	45.37
CDX88524	Canola	cytosol	29.07	45.25
CDX87395	Canola	cytosol	29.07	45.05
GSMUA_Achr9P06180_001	Banana	endoplasmic reticulum, plasma membrane	40.41	44.91
CDY56809	Canola	cytosol	29.07	44.64
Bra008406.1-P	Field mustard	cytosol	29.07	44.64
CDY22270	Canola	cytosol	28.78	44.2
VIT_19s0085g01100.t01	Wine grape	nucleus	37.5	43.65
GSMUA_Achr6P26690_001	Banana	cytosol	38.37	43.35
KRH43645	Soybean	nucleus	35.61	42.31
KRH13810	Soybean	nucleus, plastid	35.17	41.94
CDX68000	Canola	nucleus	30.52	41.26
Bra003615.1-P	Field mustard	nucleus	30.52	41.26
CDX79309	Canola	nucleus	30.09	40.67
AT1G79270.1	Thale cress	nucleus	30.96	40.34
TraesCS1D01G045100.1	Wheat	nucleus	28.63	30.69
TraesCS7D01G276800.4	Wheat	nucleus	26.74	29.44
TraesCS5D01G396400.3	Wheat	nucleus	27.91	29.0
TraesCS5D01G439100.1	Wheat	nucleus	24.56	28.74
TraesCS7D01G285000.1	Wheat	endoplasmic reticulum	24.56	27.61
TraesCS5D01G439200.1	Wheat	cytosol	25.44	27.26
TraesCS4D01G273200.4	Wheat	cytosol	28.34	26.97
TraesCS4D01G180500.5	Wheat	cytosol, nucleus, plastid	27.47	26.51
TraesCS2D01G012200.1	Wheat	cytosol	25.58	24.79
TraesCS3D01G199400.2	Wheat	cytosol	22.67	22.67
TraesCS1D01G109300.1	Wheat	cytosol	19.48	18.98

Protein Annotations

EnsemblPlants:TraesCS3D01G267900.1	EnsemblPlantsGene:TraesCS3D01G267900	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF58
PFAM:PF04146	PFscan:PS50882	SEG:seg	MapMan:16.5.2.1	:	:

Description

No Description!

Coordinates

chr3D:-:371891673..371897034

Molecular Weight (calculated)

75058.4 Da

IEP (calculated)

5.848

GRAVY (calculated)

-0.733

Length

688 amino acids

Sequence
(BLAST)

001: MEPKPNTALA HKPIEEAVEN LKIDASTKAS NGNLPAAKDA GSSDAISCIS SADAASTAAK DTEMNQGAYM GDQGMYYYGY YYPGSFGGWD ESSYYAGSNG
101: LEMQPTVVQA ENGSYLCYVP GYENGYTAYS PVVPGTGVDS QYVSKEPYYS AVIPVQDPST PGMYAQPIAY GPELVPAYTW DPYVLLDGVQ GLPVGVQQTN
201: YPTRSNYPSN KHAVPSSKAS RSTKYASGTT KGSSSAVDTV PTSANNHPSS KFANKASGAS ITKGHLPSSK FVVHTNQGKG SLYQSKGINL NESGRNCNGN
301: EKLKARSKLN EFGNRDISDK HNDESKNSLS PGADRFGLSG VQEVNDDIPS LVAVRRDSYN LPDFVTKYEQ ALFFVIKSYS EDDIHKSIKY NVWASTPNGN
401: KRLDNAYKIA QERMAGKGTK CPVFLFFSVN ASGQFCGVAE MLGPVDFNKS MNFWQQDKWN GFFPVKWHII KDVPNPQFRH IILENNENKP VTNSRDTQEV
501: KFLQGAEMLN IFKNFSCKTS ILDDFDFYEN RQKVMQDRRG KPLTTSLDHL TPKDEKPAES EKQAQSASSV EHHNAKRNEE QSNDVTTDLD TAKRGQDQSN
601: VVAADVDAAK TSEQSKGVAT DFDTAKTSEQ SKEVATDLDA AKRSEETNGV TADVDTSKRS KEQSNMVAAK LDTAKKSEEQ TSSVAAAG

Best Arabidopsis Sequence Match ( AT1G79270.3 )
(BLAST)

001: MVKNLKVDPL AKVTASTTSM VSAKENKNQS EAEPSYYETL ETYQGLPCPY GGYYGYYYPG LDGSVGEAKD NGYYGYGTEV QYPVMQGENG SVIYLMPGFQ
101: SYDASQTYMP INPVGVSSQA LHSPMYAAQG YYQNQFGYAD VSSPTYLWDP VGDRYVYGVA SYTPPLKQNI SSSSHNHNNY YSKSKNSFTG HGMGDRPKTP
201: RKASQNSYAP PPLLNQEKGR IAYPMDPVKK KSGALNRDET EKAKARTKEN GTSMNDLANG QDHITNGECE SCSLDAEGNE RSNGVGSVIR RDQYNLPSFQ
301: TKYEEAIFFV IKSYSEDDIH KSIKYNVWSS TLNGNKKLDS AYQESQKKAA DKSGKCPVFL FFSVNASGQF CGVAEMIGRV DYEKSMEFWQ QDKWTGYFPV
401: KWHIIKDVPN PQLRHIILEN NENKPVTNSR DTQEVRLPQG NEVLNIFKNY AAKTSILDDF DFYENREKVM VQKKLRFPPV LKKKEEDLVA DFKTMEMSNT
501: VEEGNTELTG TVS

Arabidopsis Description

ECT8Evolutionarily conserved C-terminal region 8 [Source:UniProtKB/TrEMBL;Acc:Q9FPE7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.