CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86664
CDX89856
CDY15480

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79270.1	CDX86664	AT1G03900.1	21798944
AT1G79270.1	CDX89856	AT1G03900.1	21798944
AT1G79270.1	CDY15480	AT1G03900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003615.1-P	Field mustard	nucleus	96.27	96.27
CDX68000	Canola	nucleus	95.87	95.87
CDY22270	Canola	cytosol	75.25	85.49
CDX87395	Canola	cytosol	74.46	85.36
CDX88524	Canola	cytosol	74.07	85.29
CDY56809	Canola	cytosol	75.05	85.27
AT1G79270.1	Thale cress	nucleus	83.3	80.3
CDY57677	Canola	mitochondrion	15.52	46.2
CDY51902	Canola	cytosol	13.75	45.16
KRH13810	Soybean	nucleus, plastid	48.33	42.63
KRH43645	Soybean	nucleus	48.33	42.49
VIT_19s0085g01100.t01	Wine grape	nucleus	48.92	42.13
CDY50448	Canola	cytosol	20.63	41.18
CDX91541	Canola	mitochondrion	11.98	37.42
GSMUA_Achr9P06180_001	Banana	endoplasmic reticulum, plasma membrane	44.79	36.83
GSMUA_Achr6P26690_001	Banana	cytosol	42.83	35.8
CDY07437	Canola	nucleus	28.09	33.97
CDY42891	Canola	nucleus	26.52	33.75
CDY50867	Canola	nucleus	26.52	33.75
CDY69959	Canola	nucleus	26.13	33.33
Os01t0679900-01	Rice	nucleus	39.69	33.17
CDY39299	Canola	nucleus	27.5	33.1
Zm00001d011602_P001	Maize	nucleus	39.1	32.68
CDY05744	Canola	cytosol	8.06	32.54
CDY52966	Canola	cytosol	28.49	32.37
CDY56132	Canola	nucleus	28.29	32.21
CDY29972	Canola	nucleus	25.74	31.95
CDY21154	Canola	nucleus	25.15	31.45
CDY24182	Canola	nucleus	33.2	31.24
TraesCS3B01G301100.1	Wheat	nucleus	41.26	30.52
TraesCS3D01G267900.1	Wheat	nucleus	40.67	30.09
TraesCS3A01G267700.1	Wheat	nucleus	40.27	29.67
OQU87332	Sorghum	mitochondrion, nucleus	39.1	29.66
Zm00001d043860_P001	Maize	mitochondrion	38.31	28.89
CDY58572	Canola	nucleus	27.7	27.81
CDX88661	Canola	nucleus	27.5	27.45
CDX94944	Canola	nucleus	26.72	27.36
CDY07089	Canola	nucleus	33.99	27.2
CDX93476	Canola	nucleus	26.52	27.0
CDY02802	Canola	nucleus	28.29	26.97
CDY43306	Canola	cytosol	32.42	26.92
CDY23602	Canola	nucleus	32.81	26.76
CDY23562	Canola	nucleus	32.42	26.61
CDY32718	Canola	nucleus	27.5	26.46
CDY44025	Canola	nucleus	32.22	26.37
CDY67303	Canola	nucleus	26.92	26.3
CDX90116	Canola	nucleus	26.92	26.3
CDY24224	Canola	nucleus	31.63	26.22
CDY43989	Canola	nucleus	32.61	26.18
CDX82538	Canola	nucleus	32.81	26.09
HORVU3Hr1G062620.8	Barley	mitochondrion	39.69	26.06
CDY43378	Canola	nucleus	31.43	26.06
CDX93645	Canola	nucleus	31.24	25.98
CDX75712	Canola	nucleus	32.02	25.71
CDY11758	Canola	nucleus, plastid	26.33	24.19
CDY60520	Canola	cytosol	5.3	20.45

Protein Annotations

EnsemblPlants:CDX79309	EnsemblPlantsGene:GSBRNA2T00131978001	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF56	PFAM:PF04146
PFscan:PS50882	ProteinID:CDX79309	ProteinID:CDX79309.1	SEG:seg	UniParc:UPI0004EE9697	MapMan:16.5.2.1

Description

BnaC06g19940D

Coordinates

chrLK031817:+:1241427..1244049

Molecular Weight (calculated)

57141.4 Da

IEP (calculated)

5.564

GRAVY (calculated)

-0.817

Length

509 amino acids

Sequence
(BLAST)

001: MTSHVPKPPR EPTEDMVKNL KVDPLAKVAA SSTSMKNQSE PYYETLETYQ GLPCPYGGYY GFYYPSVDGS LGEAKDNGYY GYGTDVQYPV MQGENGSLIY
101: MMPGFQSYDV SPTYMPISPA GVSSQALNSP MYAAQGYYQN QYGYGNVSSP TYLWDPVGDN YVYGVASNNQ SMKQNISSSS SHNYSNYYSK SKTSFTGHGM
201: GGRPKTPQKS SYAPLPPHNQ ERGGPLKKKY GASDRDETEK LKARNKENGS SMSENVQEDG ECESCLLDGE GKGRSNGVGS VIKRDQYNLP SFQSKYEEAM
301: FFVIKSYSED DIHKSIKYNV WSSTLNGNKK LDSAYQESQK KVAENGGTCP VFLFFSVNAS GQFCGVAEMT GRVDNEKSME FWQQDKWTGY FPVKWHIIKD
401: VPNPQLRHVI LENNENKPVT NSRDTQEVRL QQGNEVLNIF KSYAAKTSIL DDFDFYENRE RVMVQKKLRF NPVLKKQEED LVADIQTLEI SDTVKEGNTD
501: ITGTLDSLK

Best Arabidopsis Sequence Match ( AT1G79270.1 )
(BLAST)

001: MTSHVPKHPR KSFEDMVKNL KVDPLAKVTA STTSMVSAKE NKNQSEAEPS YYETLETYQG LPCPYGGYYG YYYPGLDGSV GEAKDNGYYG YGTEVQYPVM
101: QGENGSVIYL MPGFQSYDAS QTYMPINPVG VSSQALHSPM YAAQGYYQNQ FGYADVSSPT YLWDPVGDRY VYGVASYTPP LKQNISSSSH NHNNYYSKSK
201: NSFTGHGMGD RPKTPRKASQ NSYAPPPLLN QEKGRIAYPM DPVKKKSGAL NRDETEKAKA RTKENGTSMN DLANGQDHIT NGECESCSLD AEGNERSNGV
301: GSVIRRDQYN LPSFQTKYEE AIFFVIKSYS EDDIHKSIKY NVWSSTLNGN KKLDSAYQES QKKAADKSGK CPVFLFFSVN ASGQFCGVAE MIGRVDYEKS
401: MEFWQQDKWT GYFPVKWHII KDVPNPQLRH IILENNENKP VTNSRDTQEV RLPQGNEVLN IFKNYAAKTS ILDDFDFYEN REKVMVQKKL RFPPVLKKKE
501: EDLVADFKTM EMSNTVEEGN TELTGTVS

Arabidopsis Description

ECT8Evolutionarily conserved C-terminal region 8 [Source:UniProtKB/TrEMBL;Acc:Q9FPE7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.