Factsheet for GSMUA_Achr6P26690_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plasma membrane 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr5P03850_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79270.1	GSMUA_Achr5P03850_001	AT1G03900.1	21798944
AT1G79270.1	GSMUA_AchrUn_...	AT1G03900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P06180_001	Banana	endoplasmic reticulum, plasma membrane	74.38	73.18
VIT_19s0085g01100.t01	Wine grape	nucleus	48.77	50.25
KRH13810	Soybean	nucleus, plastid	47.29	49.91
KRH43645	Soybean	nucleus	47.13	49.57
Bra035104.1-P	Field mustard	cytosol	33.17	45.6
CDY56809	Canola	cytosol	33.33	45.31
CDX88524	Canola	cytosol	32.84	45.25
Bra008406.1-P	Field mustard	cytosol	33.17	45.09
CDX87395	Canola	cytosol	32.68	44.82
CDY22270	Canola	cytosol	32.84	44.64
Os01t0679900-01	Rice	nucleus	43.51	43.51
AT1G79270.1	Thale cress	nucleus	37.6	43.37
CDX68000	Canola	nucleus	35.96	43.03
Bra003615.1-P	Field mustard	nucleus	35.8	42.83
CDX79309	Canola	nucleus	35.8	42.83
Zm00001d011602_P001	Maize	nucleus	41.87	41.87
OQU87332	Sorghum	mitochondrion, nucleus	42.53	38.6
TraesCS3D01G267900.1	Wheat	nucleus	43.35	38.37
GSMUA_Achr6P12810_001	Banana	nucleus	22.17	38.35
TraesCS3B01G301100.1	Wheat	nucleus	43.19	38.23
TraesCS3A01G267700.1	Wheat	nucleus	43.19	38.06
Zm00001d043860_P001	Maize	mitochondrion	40.39	36.44
GSMUA_Achr4P14820_001	Banana	cytosol	19.54	35.95
HORVU3Hr1G062620.8	Barley	mitochondrion	43.84	34.45
GSMUA_Achr1P10560_001	Banana	nucleus	25.12	34.38
GSMUA_Achr7P01490_001	Banana	nucleus	31.03	33.75
GSMUA_Achr4P22630_001	Banana	nucleus	32.51	31.88
GSMUA_Achr4P28430_001	Banana	nucleus, plastid	31.69	31.38
GSMUA_Achr5P02830_001	Banana	cytosol	31.53	31.17
GSMUA_Achr4P21380_001	Banana	nucleus	33.33	30.85
GSMUA_Achr7P27220_001	Banana	cytosol	31.86	29.35
GSMUA_Achr4P12480_001	Banana	cytosol	27.75	29.09
GSMUA_Achr4P11560_001	Banana	nucleus	30.05	28.2
GSMUA_Achr4P04600_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	29.72	23.48
GSMUA_Achr8P29890_001	Banana	cytosol	28.57	21.45
GSMUA_Achr1P24980_001	Banana	nucleus	29.23	21.45

Protein Annotations

EnsemblPlants:GSMUA_Achr6P26690_001	EnsemblPlants:GSMUA_Achr6T26690_001	EnsemblPlantsGene:GSMUA_Achr6G26690_001	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF58
PFAM:PF04146	PFscan:PS50882	SEG:seg	UniParc:UPI000295451D	UniProt:M0TAG4	MapMan:16.5.2.1

Description

YT521-B-like family domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G26690_001]

Coordinates

chr6:-:27367907..27373011

Molecular Weight (calculated)

67844.5 Da

IEP (calculated)

7.348

GRAVY (calculated)

-0.599

Length

609 amino acids

Sequence
(BLAST)

001: MYPSRYQCFT CHSVWKTLTF HYPAIEDSMR KLKIDASMKV NSINVSGAQG ASQSDSISCI SSGDATSSIK ETEVDQEPLM GDQGMHYYGY YYPGSTGFLG
101: EWDNRFCVQR TDNLQVQHPG IQADNGSVMY YFPGYQAGYT PYSPLLPGAM YGVDGQFSSQ SYCPNLISPQ ALVSPGPLPQ QVAYGPELVP AYPWDPSFFF
201: ADEIQGSRFA VDPTKPHYRP NLSSEGHTVA PSRTFPASKS ALGTKGSSLV SDMSHPTMIH NQSQKPTKKA SAAVLSNGYD PVNKFTAYVN QGKGPLFYPS
301: SIIDMKENGQ SWVDDVKLKV RNKLNSCGDL DLLNEQNRGP RTNGTKSASQ ADIDSLKTLD VKNDGDSISV AIINKDEYNR PDFQTKYEHA LFFVIKSYSE
401: DDIHKSIKYS VWASTPNGNK RVDNAFQVAQ EKMTEKGGNC PVFLFFSVNA SGQFCGVAEM TGRVDFSKNM DFWQQDKWNG FFPVKWHIIK DVPNLQFRHI
501: ILENNDNKPV TNSRDTQEVK FSQGIEMLSI FKSHSSKTSI LDDFGFYENR QKGMQDKRNK PTTPPLVNSL PKNVESTKVP RLGDSKSQPP DLVSVEVKEG
601: LQTGIASRK

Best Arabidopsis Sequence Match ( AT1G79270.1 )
(BLAST)

001: MTSHVPKHPR KSFEDMVKNL KVDPLAKVTA STTSMVSAKE NKNQSEAEPS YYETLETYQG LPCPYGGYYG YYYPGLDGSV GEAKDNGYYG YGTEVQYPVM
101: QGENGSVIYL MPGFQSYDAS QTYMPINPVG VSSQALHSPM YAAQGYYQNQ FGYADVSSPT YLWDPVGDRY VYGVASYTPP LKQNISSSSH NHNNYYSKSK
201: NSFTGHGMGD RPKTPRKASQ NSYAPPPLLN QEKGRIAYPM DPVKKKSGAL NRDETEKAKA RTKENGTSMN DLANGQDHIT NGECESCSLD AEGNERSNGV
301: GSVIRRDQYN LPSFQTKYEE AIFFVIKSYS EDDIHKSIKY NVWSSTLNGN KKLDSAYQES QKKAADKSGK CPVFLFFSVN ASGQFCGVAE MIGRVDYEKS
401: MEFWQQDKWT GYFPVKWHII KDVPNPQLRH IILENNENKP VTNSRDTQEV RLPQGNEVLN IFKNYAAKTS ILDDFDFYEN REKVMVQKKL RFPPVLKKKE
501: EDLVADFKTM EMSNTVEEGN TELTGTVS

Arabidopsis Description

ECT8Evolutionarily conserved C-terminal region 8 [Source:UniProtKB/TrEMBL;Acc:Q9FPE7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.