Factsheet for Bra035104.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1
mitochondrion 3
cytosol 2
peroxisome 1
plastid 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plasma membrane
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	extracellular, nucleus, peroxisome, plastid, vacuole
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra015277.1-P
Bra030548.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79270.1	Bra015277.1-P	AT1G03900.1	21798944
AT1G79270.1	Bra030548.1-P	AT1G03900.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87395	Canola	cytosol	96.84	96.62
CDX88524	Canola	cytosol	94.13	94.34
Bra008406.1-P	Field mustard	cytosol	84.2	83.26
Bra003615.1-P	Field mustard	nucleus	85.55	74.46
AT1G79270.1	Thale cress	nucleus	83.52	70.08
KRH43645	Soybean	nucleus	53.05	40.59
KRH13810	Soybean	nucleus, plastid	52.82	40.55
VIT_19s0085g01100.t01	Wine grape	nucleus	52.14	39.09
GSMUA_Achr9P06180_001	Banana	endoplasmic reticulum, plasma membrane	47.86	34.25
GSMUA_Achr6P26690_001	Banana	cytosol	45.6	33.17
Bra004105.1-P	Field mustard	nucleus	29.35	32.83
Os01t0679900-01	Rice	nucleus	44.47	32.35
Bra031960.1-P	Field mustard	nucleus	28.89	32.32
Bra008509.1-P	Field mustard	cytosol	30.02	31.44
Bra018951.1-P	Field mustard	cytosol	18.28	31.27
Zm00001d011602_P001	Maize	nucleus	42.21	30.71
Bra014253.1-P	Field mustard	cytosol	20.54	30.54
Bra036423.1-P	Field mustard	nucleus	27.31	29.8
TraesCS3B01G301100.1	Wheat	nucleus	45.6	29.36
Bra038524.1-P	Field mustard	cytosol	14.9	29.33
TraesCS3D01G267900.1	Wheat	nucleus	45.37	29.22
TraesCS3A01G267700.1	Wheat	nucleus	44.7	28.65
OQU87332	Sorghum	mitochondrion, nucleus	42.44	28.02
Zm00001d043860_P001	Maize	mitochondrion	41.76	27.41
Bra039366.1-P	Field mustard	nucleus	36.79	27.12
Bra034710.1-P	Field mustard	nucleus	36.34	27.1
Bra019988.1-P	Field mustard	nucleus	29.57	26.15
Bra018708.1-P	Field mustard	nucleus	35.44	25.82
Bra006780.1-P	Field mustard	cytosol	29.35	25.54
Bra027432.1-P	Field mustard	nucleus	36.34	25.39
Bra010911.1-P	Field mustard	nucleus	29.8	25.34
Bra039400.1-P	Field mustard	nucleus	36.12	25.16
HORVU3Hr1G062620.8	Barley	mitochondrion	43.79	25.03
Bra001506.1-P	Field mustard	nucleus	35.67	24.73
Bra020382.1-P	Field mustard	nucleus	29.35	23.51

Protein Annotations

EnsemblPlants:Bra035104.1	EnsemblPlants:Bra035104.1-P	EnsemblPlantsGene:Bra035104	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF56
PFAM:PF04146	PFscan:PS50882	SEG:seg	UniParc:UPI0002541D47	UniProt:M4F207	MapMan:16.5.2.1

Description

AT1G79270 (E=4e-112) ECT8 | ECT8 (evolutionarily conserved C-terminal region 8)

Coordinates

chrA07:+:22183712..22185508

Molecular Weight (calculated)

50168.4 Da

IEP (calculated)

6.526

GRAVY (calculated)

-0.744

Length

443 amino acids

Sequence
(BLAST)

001: MVKNLKVDPL AKAVSASTTS MKSRQSEPYY GTLETYQGLP CPYGGYYGFY YPSLDGSVGE AKDNGYYSYG TEAQYPVMQG ENGSLVYMMP GFQSYDVSST
101: YMPISPACVS SQALHSPMYA AQGYYQNQYG YGDVSSPTYL WEDKYAYGVA SSNQPLKQNI SCSSSHNHSN YYSKSKTSFT SQSTGARPKK SGVLNRDETE
201: KAKARNKDNV NSTEGECESR VGSVIKRDQY NLPSFETKYE EAMFFVIKSY SEDDIHKSIK YSVWSSTLNG NKKLDNAFQE SQKKVAEKGG TCPVFLFFSV
301: NASGQFCGVA EMTGRVDYET SMDFWQQDKW TGYFPVKWHI IKDVPNPQLR HVILENNENK PVTNSRDTQE VRLPQGNEVL NIFKNYAAKT SILDDFDFYE
401: NREKVMVQKK LRFPPAQIKK KEEEEELVAD LQTMEISKSE KLA

Best Arabidopsis Sequence Match ( AT1G79270.1 )
(BLAST)

001: MTSHVPKHPR KSFEDMVKNL KVDPLAKVTA STTSMVSAKE NKNQSEAEPS YYETLETYQG LPCPYGGYYG YYYPGLDGSV GEAKDNGYYG YGTEVQYPVM
101: QGENGSVIYL MPGFQSYDAS QTYMPINPVG VSSQALHSPM YAAQGYYQNQ FGYADVSSPT YLWDPVGDRY VYGVASYTPP LKQNISSSSH NHNNYYSKSK
201: NSFTGHGMGD RPKTPRKASQ NSYAPPPLLN QEKGRIAYPM DPVKKKSGAL NRDETEKAKA RTKENGTSMN DLANGQDHIT NGECESCSLD AEGNERSNGV
301: GSVIRRDQYN LPSFQTKYEE AIFFVIKSYS EDDIHKSIKY NVWSSTLNGN KKLDSAYQES QKKAADKSGK CPVFLFFSVN ASGQFCGVAE MIGRVDYEKS
401: MEFWQQDKWT GYFPVKWHII KDVPNPQLRH IILENNENKP VTNSRDTQEV RLPQGNEVLN IFKNYAAKTS ILDDFDFYEN REKVMVQKKL RFPPVLKKKE
501: EDLVADFKTM EMSNTVEEGN TELTGTVS

Arabidopsis Description

ECT8Evolutionarily conserved C-terminal region 8 [Source:UniProtKB/TrEMBL;Acc:Q9FPE7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.