Factsheet for Bra039400.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001665.1-P
Bra022219.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13460.1	Bra001665.1-P	AT3G17510.1	16113215
AT3G13460.1	Bra022219.1-P	AT3G17510.1	16113215

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07089	Canola	nucleus	97.33	97.33
Bra027432.1-P	Field mustard	nucleus	81.76	82.02
Bra001506.1-P	Field mustard	nucleus	81.29	80.91
AT3G13460.1	Thale cress	cytosol	80.19	76.46
VIT_06s0004g00200.t01	Wine grape	nucleus	59.12	53.33
KRH43005	Soybean	nucleus	58.49	52.62
KRH59123	Soybean	nucleus	57.55	51.69
Bra004105.1-P	Field mustard	nucleus	30.82	49.49
Solyc01g028860.2.1	Tomato	nucleus	54.87	49.43
PGSC0003DMT400061684	Potato	endoplasmic reticulum, plasma membrane	54.72	47.28
GSMUA_Achr7P01490_001	Banana	nucleus	41.04	46.61
Bra008509.1-P	Field mustard	cytosol	30.82	46.34
Bra031960.1-P	Field mustard	nucleus	28.14	45.2
GSMUA_Achr7P27220_001	Banana	cytosol	46.86	45.08
Bra036423.1-P	Field mustard	nucleus	28.62	44.83
GSMUA_Achr4P28430_001	Banana	nucleus, plastid	43.08	44.55
GSMUA_Achr4P22630_001	Banana	nucleus	43.4	44.44
GSMUA_Achr4P21380_001	Banana	nucleus	45.13	43.62
GSMUA_Achr5P02830_001	Banana	cytosol	42.14	43.51
GSMUA_Achr4P14820_001	Banana	cytosol	22.48	43.2
EER93461	Sorghum	nucleus	44.5	42.94
KXG40139	Sorghum	plastid	47.96	42.9
Os03t0748000-01	Rice	plasma membrane	44.18	42.51
Os03t0158500-01	Rice	nucleus	46.86	42.15
Zm00001d034005_P003	Maize	plasma membrane	43.4	41.82
TraesCS5D01G396400.3	Wheat	nucleus	42.77	41.09
TraesCS5B01G391500.1	Wheat	nucleus	42.77	41.09
TraesCS5A01G386600.2	Wheat	nucleus	42.61	40.87
HORVU5Hr1G094950.6	Barley	cytosol, nucleus	42.45	40.6
TraesCS5A01G431200.1	Wheat	nucleus	36.95	39.9
TraesCS5D01G439100.1	Wheat	nucleus	36.79	39.8
TraesCS5B01G433000.1	Wheat	cytosol	37.11	39.6
TraesCS4D01G273200.4	Wheat	cytosol	44.97	39.56
Bra018951.1-P	Field mustard	cytosol	16.04	39.38
HORVU4Hr1G072940.4	Barley	cytosol	45.75	39.22
Bra038524.1-P	Field mustard	cytosol	13.84	39.11
TraesCS4A01G031600.2	Wheat	cytosol	44.81	39.09
Zm00001d048424_P003	Maize	plastid	44.97	38.65
EER93313	Sorghum	cytosol	34.75	38.64
Bra014253.1-P	Field mustard	cytosol	17.92	38.26
TraesCS4B01G274500.2	Wheat	plastid	46.07	38.2
KXG34475	Sorghum	cytosol	38.52	37.93
Bra008406.1-P	Field mustard	cytosol	25.94	36.83
Zm00001d027731_P012	Maize	plastid	46.38	36.74
Os07t0170300-01	Rice	plasma membrane	34.43	36.38
Bra035104.1-P	Field mustard	cytosol	25.16	36.12
TraesCS5A01G431100.1	Wheat	cytosol	36.16	35.83
TraesCS5B01G432900.2	Wheat	extracellular	36.16	35.49
Zm00001d007890_P002	Maize	mitochondrion	36.32	35.38
TraesCS5D01G439200.1	Wheat	cytosol	35.69	35.36
Bra034710.1-P	Field mustard	nucleus	33.02	35.35
HORVU5Hr1G104380.1	Barley	plastid	36.48	35.1
Bra039366.1-P	Field mustard	nucleus	32.23	34.11
Zm00001d018896_P002	Maize	mitochondrion	37.74	33.99
Bra003615.1-P	Field mustard	nucleus	27.2	33.99
HORVU5Hr1G104390.3	Barley	plastid	35.06	32.41
Bra019988.1-P	Field mustard	nucleus	24.37	30.94
Bra006780.1-P	Field mustard	cytosol	24.53	30.65
Bra018708.1-P	Field mustard	nucleus	29.25	30.59
Bra010911.1-P	Field mustard	nucleus	24.21	29.56
Bra020382.1-P	Field mustard	nucleus	24.37	28.03

Protein Annotations

EnsemblPlants:Bra039400.1	EnsemblPlants:Bra039400.1-P	EnsemblPlantsGene:Bra039400	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF63
PFAM:PF04146	PFscan:PS50882	SEG:seg	UniParc:UPI000253E94D	UniProt:M4FE79	MapMan:16.5.2.1

Description

AT3G13460 (E=3e-223) ECT2 | ECT2; protein binding

Coordinates

chrScaffold000164:+:288275..291126

Molecular Weight (calculated)

68894.5 Da

IEP (calculated)

4.946

GRAVY (calculated)

-0.744

Length

636 amino acids

Sequence
(BLAST)

001: MATVAQTADQ SADMLQKLTL DSQPKGSEIP EPKKAAVYQY GGVDMHGQVP SYDRSLTPLL PSDAADPSVC YVPNAYQQPF YYGYGASGQD WSEFTGYNPN
101: LEGVDMSAGV YGENGSLVYP GYGYAAYPYS PATSPAPQVG GDGQLYGAQH YQYPAFFPAG PVATPAQGDL TANKAGGVKT LPAESKNVAS AAGIAKGAPG
201: KPNSQTTLNT ASNFYGNGGP GSGFAAGYQD PRYSYDAYYG NVSSYDASKY SDVQRPVSGS GVASSYSKAT SVPSSRNQNY RSNSHYTGVH QAASMAGYST
301: TQGLYNRMYP NKLYSNNYGS SGRYGSSGYD SRTNGRAWVN TTDNRYRSWG RGNNGYFYGN ENNGDGLNEL NRGPRAKGTK NQKDNSEDSL EVKEQTGASD
401: VAETVETENT CIVPDREQYN KEDFPVDYEN AMFFVIKSYS EDDVHKSIKY NVWASTPNGN KKLAAAYEEA QQKPGGCPIF LFFSVNASGQ FVGLAEMTGP
501: VDFDTNVEYW QQDKWTGSFP LKWHIVKDVP NSLLKHITLE NNENKPVTNS RDTQEVKLEQ GLKIVKIFKE HTSKTCILDD FSFYEVSEEK TATVDKKESS
601: TTDKESSPAG QTTGDVTKVD ENGSVAKPVG VVANGC

Best Arabidopsis Sequence Match ( AT3G13460.1 )
(BLAST)

001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC

Arabidopsis Description

ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.