Factsheet for HORVU5Hr1G094950.6

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G017240.4
HORVU1Hr1G017380.4
HORVU2Hr1G027080.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13460.1	HORVU1Hr1G017240.4	AT3G17510.1	16113215
AT3G13460.1	HORVU1Hr1G017380.4	AT3G17510.1	16113215
AT3G13460.1	HORVU2Hr1G027080.5	AT3G17510.1	16113215

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G391500.1	Wheat	nucleus	95.04	95.47
TraesCS5A01G386600.2	Wheat	nucleus	94.59	94.87
TraesCS5D01G396400.3	Wheat	nucleus	94.44	94.86
EER93461	Sorghum	nucleus	77.74	78.45
Zm00001d034005_P003	Maize	plasma membrane	76.54	77.12
Os03t0748000-01	Rice	plasma membrane	76.39	76.85
CDY57677	Canola	mitochondrion	13.23	51.46
VIT_06s0004g00200.t01	Wine grape	nucleus	54.14	51.06
GSMUA_Achr4P14820_001	Banana	cytosol	25.26	50.76
KRH43005	Soybean	nucleus	51.73	48.66
KRH59123	Soybean	nucleus	51.43	48.31
GSMUA_Achr7P27220_001	Banana	cytosol	47.82	48.11
Solyc01g028860.2.1	Tomato	nucleus	49.17	46.32
Bra004105.1-P	Field mustard	nucleus	27.52	46.21
CDY69959	Canola	nucleus	27.52	45.86
AT1G55500.5	Thale cress	cytosol	41.5	45.62
HORVU4Hr1G072940.4	Barley	cytosol	50.68	45.42
VIT_08s0007g07450.t01	Wine grape	cytosol	47.37	45.39
PGSC0003DMT400061684	Potato	endoplasmic reticulum, plasma membrane	50.23	45.38
CDY50867	Canola	nucleus	27.22	45.25
CDY42891	Canola	nucleus	27.22	45.25
CDY07437	Canola	nucleus	28.57	45.13
CDY50448	Canola	cytosol	17.29	45.1
CDY39299	Canola	nucleus	28.57	44.92
Bra008509.1-P	Field mustard	cytosol	28.57	44.92
CDY21154	Canola	nucleus	27.37	44.72
Bra031960.1-P	Field mustard	nucleus	26.47	44.44
CDX82538	Canola	nucleus	42.71	44.38
Bra036423.1-P	Field mustard	nucleus	27.07	44.34
CDY24182	Canola	nucleus	35.94	44.18
Bra001506.1-P	Field mustard	nucleus	42.41	44.13
CDX75712	Canola	nucleus	41.95	44.01
CDY52966	Canola	cytosol	29.62	43.97
CDY29972	Canola	nucleus	27.07	43.9
CDY43989	Canola	nucleus	41.8	43.85
CDY23602	Canola	nucleus	41.05	43.75
Bra027432.1-P	Field mustard	nucleus	41.65	43.69
AT3G13460.1	Thale cress	cytosol	43.76	43.63
CDY56132	Canola	nucleus	29.32	43.62
CDX91541	Canola	mitochondrion	10.68	43.56
CDY07089	Canola	nucleus	41.35	43.24
AT3G03950.3	Thale cress	cytosol	27.52	42.76
Bra039400.1-P	Field mustard	nucleus	40.6	42.45
AT5G61020.1	Thale cress	cytosol	30.53	41.01
KRG94807	Soybean	nucleus	39.7	40.06
KRH06717	Soybean	nucleus	38.65	38.76
KRH70155	Soybean	nucleus	36.69	38.73
HORVU5Hr1G104380.1	Barley	plastid	38.2	38.43
Bra018951.1-P	Field mustard	cytosol	14.59	37.45
Bra014253.1-P	Field mustard	cytosol	16.54	36.91
Bra038524.1-P	Field mustard	cytosol	12.18	36.0
HORVU5Hr1G104390.3	Barley	plastid	36.24	35.03
HORVU1Hr1G008330.2	Barley	nucleus	31.43	32.55
HORVU7Hr1G069070.2	Barley	cytosol	27.37	30.85
HORVU7Hr1G058250.46	Barley	cytosol, plastid	21.95	30.8
HORVU3Hr1G062620.8	Barley	mitochondrion	29.32	25.16
HORVU2Hr1G023660.2	Barley	nucleus	26.17	24.54
HORVU4Hr1G052390.3	Barley	golgi	27.37	24.27
HORVU3Hr1G045890.2	Barley	endoplasmic reticulum, peroxisome, plasma membrane	23.01	23.39
HORVU2Hr1G001810.8	Barley	cytosol	26.17	22.08

Protein Annotations

EnsemblPlants:HORVU5Hr1G094950.6	EnsemblPlantsGene:HORVU5Hr1G094950	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF38	PFAM:PF04146
PFscan:PS50882	SEG:seg	UniParc:UPI000B4676FD	UniProt:A0A287SC69	MapMan:16.5.2.1	:

Description

No Description!

Coordinates

chrchr5H:+:597313552..597317278

Molecular Weight (calculated)

71958.7 Da

IEP (calculated)

8.639

GRAVY (calculated)

-0.810

Length

665 amino acids

Sequence
(BLAST)

001: SANAGNGQGA GLHVDMQKLS LEGKKDAAGA DAAQQPSGMQ YGSANTGNSQ SVEPHVDRSI TPLLQEAMDP NFFYQPNGYP SPAYYYPSGY DGSTNEWDSR
101: YAGHEGMEVP QSVYGDMYHG YGYAPYGPYP SGSPVPTVGH DGQSYGTQQY QYPGQYYQQP APTNPMHGIN SANPQSELPS AAAHQARATV VSAKATTGTA
201: SGIANAANSL PRKQTHHHVS VTNSGSYGRG PSQGGPSASN FGHTGHRSPA QWYDGPVYSN GHQRSIASST SYVSNSSSAK NQSHRPTTNL MGMHTHVPSS
301: GMGLTSPSYS SRMYPDSRLY GQYGQYGNTL KAGLGFGSNV YNSRNNGQWG VVDTVKYKPR GRTAFGFGSE NQDGFAELNR GPRSGGFRHQ KPFGPTITIA
401: VKGQILPSVG KQENIVLPDK NQFNQEGFSA TYKDAKFFVI KSYSEDDVHK SIKYNVWAST PNGNKKLDAG YREAQEKSSE CPVFLFFSVN TSGQFVGVAE
501: MVGPVDFDKT VDYWQQDKWN GCFSIKWHIV KDIPNNILKH ITLDNNDNKP VTNSRDTQEV KLEQGLQMLK IFKEHVSKTS ILDDFAFYEN RQKLMQEKRA
601: KQQPLQGISG VPVQGGDEKE KNTANGNSAA PKQTPSKEST APAAGEEANA SKPTTTAESG VASAN

Best Arabidopsis Sequence Match ( AT3G13460.1 )
(BLAST)

001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC

Arabidopsis Description

ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.