CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plasma membrane 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER97615
EES00612
OQU77359

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13460.1	EER97615	AT3G17510.1	16113215
AT3G13460.1	EES00612	AT3G17510.1	16113215
AT3G13460.1	OQU77359	AT3G17510.1	16113215

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034005_P003	Maize	plasma membrane	94.23	94.09
Os03t0748000-01	Rice	plasma membrane	80.42	80.18
TraesCS5D01G396400.3	Wheat	nucleus	79.51	79.15
TraesCS5B01G391500.1	Wheat	nucleus	79.06	78.7
TraesCS5A01G386600.2	Wheat	nucleus	79.06	78.58
HORVU5Hr1G094950.6	Barley	cytosol, nucleus	78.45	77.74
VIT_06s0004g00200.t01	Wine grape	nucleus	56.75	53.05
CDY57677	Canola	mitochondrion	13.51	52.05
KRH43005	Soybean	nucleus	55.24	51.49
GSMUA_Achr4P14820_001	Banana	cytosol	25.8	51.36
KRH59123	Soybean	nucleus	54.63	50.85
Solyc01g028860.2.1	Tomato	nucleus	53.26	49.72
GSMUA_Achr7P27220_001	Banana	cytosol	49.77	49.62
KXG40139	Sorghum	plastid	52.81	48.95
VIT_08s0007g07450.t01	Wine grape	cytosol	50.68	48.13
PGSC0003DMT400061684	Potato	endoplasmic reticulum, plasma membrane	53.72	48.1
AT1G55500.5	Thale cress	cytosol	43.85	47.77
CDY21154	Canola	nucleus	29.44	47.67
Bra036423.1-P	Field mustard	nucleus	29.14	47.29
CDY42891	Canola	nucleus	28.68	47.25
CDY50867	Canola	nucleus	28.68	47.25
CDY69959	Canola	nucleus	28.53	47.12
CDY50448	Canola	cytosol	18.21	47.06
CDY29972	Canola	nucleus	29.14	46.83
Bra031960.1-P	Field mustard	nucleus	28.07	46.72
Bra004105.1-P	Field mustard	nucleus	27.77	46.21
CDY24182	Canola	nucleus	37.94	46.21
AT3G13460.1	Thale cress	cytosol	46.74	46.18
CDY07437	Canola	nucleus	29.44	46.08
CDX91541	Canola	mitochondrion	11.38	46.01
CDX82538	Canola	nucleus	44.61	45.94
CDY39299	Canola	nucleus	29.44	45.86
Bra001506.1-P	Field mustard	nucleus	44.46	45.85
CDX75712	Canola	nucleus	44.01	45.74
CDY23602	Canola	nucleus	42.94	45.35
CDY43989	Canola	nucleus	43.55	45.27
Bra027432.1-P	Field mustard	nucleus	43.4	45.11
CDY07089	Canola	nucleus	43.4	44.97
AT3G03950.3	Thale cress	cytosol	29.14	44.86
Bra039400.1-P	Field mustard	nucleus	42.94	44.5
Bra008509.1-P	Field mustard	cytosol	28.53	44.44
CDY56132	Canola	nucleus	29.89	44.07
CDY52966	Canola	cytosol	29.89	43.97
EER93313	Sorghum	cytosol	36.27	41.78
AT5G61020.1	Thale cress	cytosol	30.2	40.2
KRG94807	Soybean	nucleus	40.06	40.06
KRH06717	Soybean	nucleus	39.45	39.22
KRH70155	Soybean	nucleus	37.48	39.21
KXG34475	Sorghum	cytosol	38.39	39.16
Bra018951.1-P	Field mustard	cytosol	14.87	37.84
Bra014253.1-P	Field mustard	cytosol	16.69	36.91
Bra038524.1-P	Field mustard	cytosol	12.59	36.89
EES14722	Sorghum	nucleus	31.41	34.85
KXG27074	Sorghum	cytosol	28.98	34.6
KXG25412	Sorghum	cytosol	31.71	32.71
OQU87332	Sorghum	mitochondrion, nucleus	29.44	28.91
KXG21015	Sorghum	nucleus	27.01	27.26
KXG24185	Sorghum	nucleus	23.98	21.56
OQU77486	Sorghum	cytosol	20.33	18.93

Protein Annotations

EnsemblPlants:EER93461	EnsemblPlantsGene:SORBI_3001G090500	EntrezGene:8086254	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF38
PFAM:PF04146	PFscan:PS50882	ProteinID:EER93461	ProteinID:EER93461.1	RefSeq:XP_002466463.1	SEG:seg
unigene:Sbi.1843	UniParc:UPI0001A8268E	UniProt:C5X154	MapMan:16.5.2.1	:	:

Description

hypothetical protein

Coordinates

chr1:-:7004542..7007984

Molecular Weight (calculated)

71613.7 Da

IEP (calculated)

9.055

GRAVY (calculated)

-0.826

Length

659 amino acids

Sequence
(BLAST)

001: MATVAPAPTA ADQTTNLLQK LSLESKDGSD AAKKPSGMPY GSAHAGDAQS AASQVDRSIT PLLQEAMDPN FFYQPNAYAS PAYYFPSGYD GSANEWDSRY
101: SGHEGMEMPP QSVYGDMYHG YGYAPYGPYP SGSPVPTVGH DGQSYGSQQY QYPTQYYQQP TPTNAKHGVN VASSQPEPPS VASQQARVLV DATKATPNMS
201: ANGMTTAHNS SLPRKQTHLN VSVANNGSYG RGPMQGGGPS ASNYGHNGVR SPAQWYDGPV YSNGHQIPTA SSTSYRSNSS STKSQSQRPT TNLMGIHAQM
301: PSSGMGLTSP SYSSRMYPDN RLYGQYGQYG NTLKGGLGFG SNMYNSRNNG RWGVVDTKYK PRGRAPFGFS GENQDGFTEL NRGPRSGGFK HQKQFGPTVT
401: IAVKGQALPS AGKQNSALPD KGQFNQEGFP LAYKDAKFFV IKSYSEDDVH KSIKYNVWAS TPNGNKKLDA GYREAQEKSS DCPVFLFFSV NTSGQFVGVA
501: EMVGPVDFDK TVEYWQQDKW NGCFPLKWHI VKDVPNNILK HITLDNNDNK PVTNSRDTQE VKLEQGLEML KIFKEHVTKT SILDDFSFYE NRQKLMQEKR
601: AKQQLLQGQG GDVSQEKDKD ATNGKPGAQK HALSKEGIPA EAAANASKPV AESGISNGN

Best Arabidopsis Sequence Match ( AT1G55500.3 )
(BLAST)

001: MSTVAPPADQ AADVLKKLSL DSKSRTLEIP EPTKKTGVYQ YGAMDSNGQV PSFDRSLSPM LPSDALDPSV FYVPNVYQQP YYYGYGSDYT GYTNSESVDM
101: TSGYGYAAFP YSPATSPAPQ LGGDGQLYGA QQYQYPFPLT ASSGPFASSV PASTQSKLST NKAANSASAG IPKGMNGSAP VKPLNQSALY GNSALGGGLA
201: AGYQDPRYSY DGFYTPVSWH DGSNFSDVQR SVSGSGVASS YSKANNNVPA TRNQNSSSNS HYTSMYQPAS MTGYAAQGYY DRVSPNKSYG QYGSTVRSGM
301: GYGSSGYGSR TNERGWLNTD NKYRSRGRGN SYFYGNENID GLNELNRGPR AKGTKATEEV SSEEVKKQTF DESNTEETVT CVLPDREECN RDDFPVEYKD
401: AKFFIIKSYS EDDVHKSIKY NVWASTPNGN KKLDAAYQEA QQKSSGCPVF LFFSVNASGQ FIGLAEMKGP VDFNKNIEYW QQDKWTGSFP LKWHILKDVP
501: NSLLKHITLE YNENKPVTNS RDTQEVKLEQ GLKVVKIFKE HNSKTCILDD FSFYEARQKT ILEKKAKQQQ SQKQVWEGKT NDEKPGTVDS TM

Arabidopsis Description

ECT4evolutionarily conserved C-terminal region 4 [Source:TAIR;Acc:AT1G55500]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.