Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13460.1 | CDX75921 | AT3G17510.1 | 16113215 |
| AT3G13460.1 | CDX82366 | AT3G17510.1 | 16113215 |
| AT3G13460.1 | CDX92136 | AT3G17510.1 | 16113215 |
| AT3G13460.1 | CDX95849 | AT3G17510.1 | 16113215 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039400.1-P | Field mustard | nucleus | 97.33 | 97.33 |
| CDY24182 | Canola | nucleus | 81.6 | 95.93 |
| CDY43989 | Canola | nucleus | 82.39 | 82.65 |
| CDY23602 | Canola | nucleus | 80.97 | 82.53 |
| CDX82538 | Canola | nucleus | 82.39 | 81.88 |
| CDX75712 | Canola | nucleus | 80.03 | 80.28 |
| AT3G13460.1 | Thale cress | cytosol | 80.66 | 76.91 |
| CDY57677 | Canola | mitochondrion | 14.62 | 54.39 |
| VIT_06s0004g00200.t01 | Wine grape | nucleus | 59.28 | 53.48 |
| KRH43005 | Soybean | nucleus | 58.33 | 52.48 |
| KRH59123 | Soybean | nucleus | 57.39 | 51.55 |
| CDY50448 | Canola | cytosol | 19.97 | 49.8 |
| Solyc01g028860.2.1 | Tomato | nucleus | 55.03 | 49.58 |
| CDY07437 | Canola | nucleus | 32.55 | 49.17 |
| CDY39299 | Canola | nucleus | 32.08 | 48.23 |
| PGSC0003DMT400061684 | Potato | endoplasmic reticulum, plasma membrane | 55.03 | 47.55 |
| CDX91541 | Canola | mitochondrion | 11.95 | 46.63 |
| CDY56132 | Canola | nucleus | 32.7 | 46.53 |
| CDY52966 | Canola | cytosol | 32.7 | 46.43 |
| GSMUA_Achr7P01490_001 | Banana | nucleus | 40.88 | 46.43 |
| GSMUA_Achr7P27220_001 | Banana | cytosol | 47.48 | 45.69 |
| CDY69959 | Canola | nucleus | 28.62 | 45.61 |
| CDY21154 | Canola | nucleus | 28.93 | 45.21 |
| CDY29972 | Canola | nucleus | 29.09 | 45.12 |
| CDY50867 | Canola | nucleus | 28.3 | 45.0 |
| CDY42891 | Canola | nucleus | 28.3 | 45.0 |
| GSMUA_Achr4P22630_001 | Banana | nucleus | 43.55 | 44.61 |
| GSMUA_Achr4P28430_001 | Banana | nucleus, plastid | 43.08 | 44.55 |
| GSMUA_Achr4P21380_001 | Banana | nucleus | 45.44 | 43.92 |
| GSMUA_Achr4P14820_001 | Banana | cytosol | 22.64 | 43.5 |
| EER93461 | Sorghum | nucleus | 44.97 | 43.4 |
| GSMUA_Achr5P02830_001 | Banana | cytosol | 41.82 | 43.18 |
| KXG40139 | Sorghum | plastid | 47.48 | 42.48 |
| Os03t0748000-01 | Rice | plasma membrane | 44.03 | 42.36 |
| Zm00001d034005_P003 | Maize | plasma membrane | 43.87 | 42.27 |
| Os03t0158500-01 | Rice | nucleus | 46.38 | 41.73 |
| TraesCS5B01G391500.1 | Wheat | nucleus | 43.4 | 41.69 |
| TraesCS5D01G396400.3 | Wheat | nucleus | 43.4 | 41.69 |
| TraesCS5A01G386600.2 | Wheat | nucleus | 43.24 | 41.48 |
| HORVU5Hr1G094950.6 | Barley | cytosol, nucleus | 43.24 | 41.35 |
| CDY51902 | Canola | cytosol | 10.06 | 41.29 |
| TraesCS5A01G431200.1 | Wheat | nucleus | 36.95 | 39.9 |
| TraesCS5D01G439100.1 | Wheat | nucleus | 36.79 | 39.8 |
| CDY05744 | Canola | cytosol | 7.86 | 39.68 |
| TraesCS5B01G433000.1 | Wheat | cytosol | 37.11 | 39.6 |
| TraesCS4D01G273200.4 | Wheat | cytosol | 44.5 | 39.14 |
| HORVU4Hr1G072940.4 | Barley | cytosol | 45.28 | 38.81 |
| TraesCS4A01G031600.2 | Wheat | cytosol | 44.34 | 38.68 |
| EER93313 | Sorghum | cytosol | 34.75 | 38.64 |
| KXG34475 | Sorghum | cytosol | 38.84 | 38.24 |
| Zm00001d048424_P003 | Maize | plastid | 44.34 | 38.11 |
| TraesCS4B01G274500.2 | Wheat | plastid | 45.6 | 37.81 |
| CDY56809 | Canola | cytosol | 25.94 | 36.83 |
| CDY22270 | Canola | cytosol | 25.79 | 36.61 |
| Os07t0170300-01 | Rice | plasma membrane | 34.59 | 36.54 |
| Zm00001d027731_P012 | Maize | plastid | 45.91 | 36.36 |
| CDX87395 | Canola | cytosol | 25.16 | 36.04 |
| CDX88524 | Canola | cytosol | 25.0 | 35.97 |
| TraesCS5A01G431100.1 | Wheat | cytosol | 36.16 | 35.83 |
| Zm00001d007890_P002 | Maize | mitochondrion | 36.64 | 35.68 |
| TraesCS5B01G432900.2 | Wheat | extracellular | 36.16 | 35.49 |
| TraesCS5D01G439200.1 | Wheat | cytosol | 35.69 | 35.36 |
| HORVU5Hr1G104380.1 | Barley | plastid | 36.64 | 35.25 |
| CDY23562 | Canola | nucleus | 34.28 | 35.16 |
| CDY44025 | Canola | nucleus | 34.12 | 34.89 |
| Zm00001d018896_P002 | Maize | mitochondrion | 38.21 | 34.42 |
| CDY24224 | Canola | nucleus | 32.86 | 34.04 |
| CDY43378 | Canola | nucleus | 32.86 | 34.04 |
| CDX79309 | Canola | nucleus | 27.2 | 33.99 |
| CDX68000 | Canola | nucleus | 27.04 | 33.79 |
| HORVU5Hr1G104390.3 | Barley | plastid | 35.06 | 32.41 |
| CDX94944 | Canola | nucleus | 24.84 | 31.79 |
| CDX93476 | Canola | nucleus | 24.37 | 31.0 |
| CDY43306 | Canola | cytosol | 29.56 | 30.67 |
| CDY58572 | Canola | nucleus | 24.21 | 30.37 |
| CDY02802 | Canola | nucleus | 25.47 | 30.34 |
| CDX88661 | Canola | nucleus | 24.21 | 30.2 |
| CDX90116 | Canola | nucleus | 24.69 | 30.13 |
| CDY67303 | Canola | nucleus | 24.69 | 30.13 |
| CDY32718 | Canola | nucleus | 24.84 | 29.87 |
| CDX93645 | Canola | nucleus | 28.62 | 29.74 |
| CDY60520 | Canola | cytosol | 5.97 | 28.79 |
| CDY11758 | Canola | nucleus, plastid | 24.37 | 27.98 |
Protein Annotations
| EnsemblPlants:CDY07089 | EnsemblPlantsGene:GSBRNA2T00123425001 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF63 | PFAM:PF04146 |
| PFscan:PS50882 | ProteinID:CDY07089 | ProteinID:CDY07089.1 | SEG:seg | UniParc:UPI0004EEA427 | MapMan:16.5.2.1 |
Description
BnaCnng01040D
Coordinates
chrLK031975:+:41923..45506
Molecular Weight (calculated)
68649.3 Da
IEP (calculated)
4.882
GRAVY (calculated)
-0.729
Length
636 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTVAQTAD QSADMLQKLT LDSQPKASEI PEPKKAAVYQ YGGVDVHGQV PSYDRSLTPL LPSDAADPSV CYVPNAYQQP FYYGYGASGQ DWSEFTGYNP
101: SLEGVDMSAG VYGENGSLVY PGYGYAAYPY SPATSPAPQV GGDGQLYGAQ QYQYPAFFPA GPVATPAQGD LTANKAGGVK TLPAESKNVA SAAGIAKGAP
201: GKPNSQTTLN TASNFYGNGG PGSGFAAGYQ DPRYSYDAYY GNVSSYDATK YSDVQRPAAG SGVASSYSKA TSVPSSRNQN YRSNSHYTGV HQAASMAGYG
301: TTQGMYNRMY PNKLYSNNYG SSGRYGSSGY DSRTNGRGWV NTTDNRYRSW GRGNGCFYGN ENNGDGLNEL NRGPRAKGTK NQKDNSEDSL EVKEQTAASD
401: VAETVETENT CIVPDREQYN KEDFPVDYEN AMFFVIKSYS EDDVHKSIKY NVWASTPNGN KKLAAAYEEA QQKPGGCPIF LFFSVNASGQ FVGLAEMTGP
501: VDFDTNVEYW QQDKWTGSFP LKWHIVKDVP NSLLKHITLE NNENKPVTNS RDTQEVKLEQ GLKIVKIFKE HTSKTCILDD FSFYEVSEGK TATDDKKESS
601: TADKESPPAG QTTGDVTKVD ENGSVAKPVG VVANGC
101: SLEGVDMSAG VYGENGSLVY PGYGYAAYPY SPATSPAPQV GGDGQLYGAQ QYQYPAFFPA GPVATPAQGD LTANKAGGVK TLPAESKNVA SAAGIAKGAP
201: GKPNSQTTLN TASNFYGNGG PGSGFAAGYQ DPRYSYDAYY GNVSSYDATK YSDVQRPAAG SGVASSYSKA TSVPSSRNQN YRSNSHYTGV HQAASMAGYG
301: TTQGMYNRMY PNKLYSNNYG SSGRYGSSGY DSRTNGRGWV NTTDNRYRSW GRGNGCFYGN ENNGDGLNEL NRGPRAKGTK NQKDNSEDSL EVKEQTAASD
401: VAETVETENT CIVPDREQYN KEDFPVDYEN AMFFVIKSYS EDDVHKSIKY NVWASTPNGN KKLAAAYEEA QQKPGGCPIF LFFSVNASGQ FVGLAEMTGP
501: VDFDTNVEYW QQDKWTGSFP LKWHIVKDVP NSLLKHITLE NNENKPVTNS RDTQEVKLEQ GLKIVKIFKE HTSKTCILDD FSFYEVSEGK TATDDKKESS
601: TADKESPPAG QTTGDVTKVD ENGSVAKPVG VVANGC
001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC
Arabidopsis Description
ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.