Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G439100.1 | Wheat | nucleus | 92.11 | 93.37 |
| TraesCS5A01G431200.1 | Wheat | nucleus | 91.61 | 92.7 |
| HORVU5Hr1G104380.1 | Barley | plastid | 92.45 | 83.36 |
| TraesCS5B01G432900.2 | Wheat | extracellular | 62.25 | 57.25 |
| Os07t0170300-01 | Rice | plasma membrane | 56.71 | 56.15 |
| CDY57677 | Canola | mitochondrion | 14.77 | 51.46 |
| Zm00001d007890_P002 | Maize | mitochondrion | 53.86 | 49.16 |
| Zm00001d018896_P002 | Maize | mitochondrion | 54.53 | 46.03 |
| Bra004105.1-P | Field mustard | nucleus | 28.86 | 43.43 |
| CDY07437 | Canola | nucleus | 29.87 | 42.28 |
| CDY39299 | Canola | nucleus | 29.87 | 42.08 |
| CDY50448 | Canola | cytosol | 17.95 | 41.96 |
| Bra008509.1-P | Field mustard | cytosol | 29.53 | 41.61 |
| CDY56132 | Canola | nucleus | 30.37 | 40.49 |
| CDY52966 | Canola | cytosol | 30.2 | 40.18 |
| CDY21154 | Canola | nucleus | 27.18 | 39.8 |
| Bra031960.1-P | Field mustard | nucleus | 26.34 | 39.65 |
| AT3G03950.3 | Thale cress | cytosol | 28.36 | 39.49 |
| Bra036423.1-P | Field mustard | nucleus | 26.85 | 39.41 |
| CDY69959 | Canola | nucleus | 26.34 | 39.35 |
| CDY29972 | Canola | nucleus | 27.01 | 39.27 |
| CDX91541 | Canola | mitochondrion | 10.74 | 39.26 |
| CDY42891 | Canola | nucleus | 26.34 | 39.25 |
| CDY50867 | Canola | nucleus | 26.34 | 39.25 |
| AT1G55500.5 | Thale cress | cytosol | 39.09 | 38.51 |
| VIT_06s0004g00200.t01 | Wine grape | nucleus | 45.3 | 38.3 |
| AT5G61020.1 | Thale cress | cytosol | 31.71 | 38.18 |
| AT3G13460.1 | Thale cress | cytosol | 42.28 | 37.78 |
| CDY43989 | Canola | nucleus | 40.1 | 37.7 |
| CDY23602 | Canola | nucleus | 39.43 | 37.66 |
| TraesCS5B01G391500.1 | Wheat | nucleus | 41.78 | 37.61 |
| Bra027432.1-P | Field mustard | nucleus | 39.93 | 37.54 |
| Solyc01g028860.2.1 | Tomato | nucleus | 44.13 | 37.25 |
| CDY24182 | Canola | nucleus | 33.72 | 37.15 |
| Bra039400.1-P | Field mustard | nucleus | 39.6 | 37.11 |
| CDY07089 | Canola | nucleus | 39.6 | 37.11 |
| VIT_08s0007g07450.t01 | Wine grape | cytosol | 43.12 | 37.03 |
| KRH43005 | Soybean | nucleus | 43.46 | 36.63 |
| Bra001506.1-P | Field mustard | nucleus | 39.09 | 36.46 |
| CDX75712 | Canola | nucleus | 38.76 | 36.44 |
| CDX82538 | Canola | nucleus | 39.09 | 36.41 |
| KRH59123 | Soybean | nucleus | 43.12 | 36.3 |
| PGSC0003DMT400061684 | Potato | endoplasmic reticulum, plasma membrane | 43.96 | 35.6 |
| Bra014253.1-P | Field mustard | cytosol | 16.95 | 33.89 |
| KRH70155 | Soybean | nucleus | 35.74 | 33.81 |
| KRG94807 | Soybean | nucleus | 37.25 | 33.69 |
| Bra018951.1-P | Field mustard | cytosol | 14.6 | 33.59 |
| KRH06717 | Soybean | nucleus | 37.25 | 33.48 |
| TraesCS4B01G274500.2 | Wheat | plastid | 42.79 | 33.25 |
| Bra038524.1-P | Field mustard | cytosol | 11.91 | 31.56 |
| TraesCS7B01G174500.1 | Wheat | nucleus | 30.03 | 29.88 |
| TraesCS1B01G057800.3 | Wheat | nucleus | 31.88 | 29.59 |
| TraesCS7B01G182100.2 | Wheat | cytosol | 29.03 | 29.22 |
| TraesCS4B01G179100.3 | Wheat | cytosol, nucleus, plastid | 29.53 | 24.65 |
| TraesCS3B01G301100.1 | Wheat | nucleus | 28.19 | 24.42 |
| TraesCS2B01G010200.1 | Wheat | cytosol | 27.35 | 22.83 |
| TraesCS3B01G232300.2 | Wheat | cytosol | 25.84 | 22.42 |
| TraesCS1B01G128700.1 | Wheat | cytosol | 20.97 | 17.78 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G433000.1 | EnsemblPlantsGene:TraesCS5B01G433000 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF34 | PFAM:PF04146 |
| PFscan:PS50882 | SEG:seg | MapMan:16.5.2.1 | : | : | : |
Description
No Description!
Coordinates
chr5B:-:607485135..607488619
Molecular Weight (calculated)
64701.7 Da
IEP (calculated)
7.271
GRAVY (calculated)
-0.719
Length
596 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAAAADQ ATNLLQKLSL DAKTEAIDAP AAKEKASGGL GGKLNGVAAT RNPRAAEQWA NPQDYSDASM YYGAYPAAYY CAGWGDYSMY LNQDGVETPA
101: AGAYGDMYCY PQYGHDGQMY GSQQYQYPSS YHQPQNTASK PQYKSKTDKL APSKDISSAV ADPLPAVVSA PKATSNSVDE VKGLKKTSTP LNPSGNNGSY
201: LNQSSRPAYP WYGGQIYQGK QQKPSSGNPT STDSNPKSKV QSKNQNTQPL PPLMSLPNSP LASMYAANGM YNSSAYGGFW YGSQFYGPGM YGGWNNLSDG
301: KYKPRGRTAY GSYGFPNENL DGLNELKRGP RSGLSNNQHG FVPAAATAVK AQDVSATDGS NAVVQDQYNG SDLADTYENA KFFIIKSYSE DDVHKSIKYN
401: VWASTPNGNR KLDSAYLEAK SGNSPVFLLF SVNTSGQFVG LAEMVGQVDF DKTVEHWQQD KWTGCFPVKW HIVKDIPNNL LKHIILEYNE NKPVTNSRDT
501: QEVKLEQGLQ VLKIFKDHVS KTSILDDFSF YDNREKIMQE RKSQRQHQLK KESQKPEVTG ENKSAAEDNV VAAAASGVAP EDANPTAASL AVANGC
101: AGAYGDMYCY PQYGHDGQMY GSQQYQYPSS YHQPQNTASK PQYKSKTDKL APSKDISSAV ADPLPAVVSA PKATSNSVDE VKGLKKTSTP LNPSGNNGSY
201: LNQSSRPAYP WYGGQIYQGK QQKPSSGNPT STDSNPKSKV QSKNQNTQPL PPLMSLPNSP LASMYAANGM YNSSAYGGFW YGSQFYGPGM YGGWNNLSDG
301: KYKPRGRTAY GSYGFPNENL DGLNELKRGP RSGLSNNQHG FVPAAATAVK AQDVSATDGS NAVVQDQYNG SDLADTYENA KFFIIKSYSE DDVHKSIKYN
401: VWASTPNGNR KLDSAYLEAK SGNSPVFLLF SVNTSGQFVG LAEMVGQVDF DKTVEHWQQD KWTGCFPVKW HIVKDIPNNL LKHIILEYNE NKPVTNSRDT
501: QEVKLEQGLQ VLKIFKDHVS KTSILDDFSF YDNREKIMQE RKSQRQHQLK KESQKPEVTG ENKSAAEDNV VAAAASGVAP EDANPTAASL AVANGC
001: MSTVAPPADQ AADVLKKLSL DSKSRTLEIP EPTKKTGVYQ YGAMDSNGQV PSFDRSLSPM LPSDALDPSV FYVPNVYQQP YYYGYGSDYT GYTNSESVDM
101: TSGAYGENAS LVYPQGYGYA AFPYSPATSP APQLGGDGQL YGAQQYQYPF PLTASSGPFA SSVPASTQSK LSTNKAANSA SAGIPKGMNG SAPVKPLNQS
201: ALYGNSALGG GLAAGYQDPR YSYDGFYTPV SWHDGSNFSD VQRSVSGSGV ASSYSKANNN VPATRNQNSS SNSHYTSMYQ PASMTGYAAQ GYYDRVSPNK
301: SYGQYGSTVR SGMGYGSSGY GSRTNERGWL NTDNKYRSRG RGNSYFYGNE NIDGLNELNR GPRAKGTKAT EEVSSEEVKK QTFDESNTEE TVTCVLPDRE
401: ECNRDDFPVE YKDAKFFIIK SYSEDDVHKS IKYNVWASTP NGNKKLDAAY QEAQQKSSGC PVFLFFSVNA SGQFIGLAEM KGPVDFNKNI EYWQQDKWTG
501: SFPLKWHILK DVPNSLLKHI TLEYNENKPV TNSRDTQEVK LEQGLKVVKI FKEHNSKTCI LDDFSFYEAR QKTILEKKAK QQQSQKQARE ENGLGRKNQ
101: TSGAYGENAS LVYPQGYGYA AFPYSPATSP APQLGGDGQL YGAQQYQYPF PLTASSGPFA SSVPASTQSK LSTNKAANSA SAGIPKGMNG SAPVKPLNQS
201: ALYGNSALGG GLAAGYQDPR YSYDGFYTPV SWHDGSNFSD VQRSVSGSGV ASSYSKANNN VPATRNQNSS SNSHYTSMYQ PASMTGYAAQ GYYDRVSPNK
301: SYGQYGSTVR SGMGYGSSGY GSRTNERGWL NTDNKYRSRG RGNSYFYGNE NIDGLNELNR GPRAKGTKAT EEVSSEEVKK QTFDESNTEE TVTCVLPDRE
401: ECNRDDFPVE YKDAKFFIIK SYSEDDVHKS IKYNVWASTP NGNKKLDAAY QEAQQKSSGC PVFLFFSVNA SGQFIGLAEM KGPVDFNKNI EYWQQDKWTG
501: SFPLKWHILK DVPNSLLKHI TLEYNENKPV TNSRDTQEVK LEQGLKVVKI FKEHNSKTCI LDDFSFYEAR QKTILEKKAK QQQSQKQARE ENGLGRKNQ
Arabidopsis Description
ECT4evolutionarily conserved C-terminal region 4 [Source:TAIR;Acc:AT1G55500]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.