Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G439100.1 | Wheat | nucleus | 97.62 | 97.79 |
| TraesCS5B01G433000.1 | Wheat | cytosol | 92.7 | 91.61 |
| HORVU5Hr1G104380.1 | Barley | plastid | 92.7 | 82.6 |
| TraesCS5A01G431100.1 | Wheat | cytosol | 63.84 | 58.57 |
| Os07t0170300-01 | Rice | plasma membrane | 57.22 | 55.98 |
| CDY57677 | Canola | mitochondrion | 15.62 | 53.8 |
| Zm00001d007890_P002 | Maize | mitochondrion | 54.16 | 48.85 |
| Zm00001d018896_P002 | Maize | mitochondrion | 54.84 | 45.75 |
| Bra004105.1-P | Field mustard | nucleus | 29.88 | 44.44 |
| CDY50448 | Canola | cytosol | 18.85 | 43.53 |
| CDY39299 | Canola | nucleus | 31.24 | 43.5 |
| CDY07437 | Canola | nucleus | 31.07 | 43.47 |
| Bra008509.1-P | Field mustard | cytosol | 30.73 | 42.79 |
| CDX91541 | Canola | mitochondrion | 11.54 | 41.72 |
| CDY56132 | Canola | nucleus | 31.58 | 41.61 |
| CDY52966 | Canola | cytosol | 31.41 | 41.29 |
| CDY21154 | Canola | nucleus | 27.5 | 39.8 |
| AT3G03950.3 | Thale cress | cytosol | 28.86 | 39.72 |
| Bra031960.1-P | Field mustard | nucleus | 26.66 | 39.65 |
| Bra036423.1-P | Field mustard | nucleus | 27.16 | 39.41 |
| CDY69959 | Canola | nucleus | 26.66 | 39.35 |
| CDY29972 | Canola | nucleus | 27.33 | 39.27 |
| CDY42891 | Canola | nucleus | 26.66 | 39.25 |
| CDY50867 | Canola | nucleus | 26.66 | 39.25 |
| AT5G61020.1 | Thale cress | cytosol | 32.6 | 38.79 |
| AT1G55500.5 | Thale cress | cytosol | 39.22 | 38.18 |
| CDY43989 | Canola | nucleus | 40.92 | 38.01 |
| CDY23602 | Canola | nucleus | 40.07 | 37.82 |
| Bra027432.1-P | Field mustard | nucleus | 40.58 | 37.7 |
| VIT_06s0004g00200.t01 | Wine grape | nucleus | 44.99 | 37.59 |
| TraesCS5A01G386600.2 | Wheat | nucleus | 42.11 | 37.41 |
| CDY24182 | Canola | nucleus | 34.13 | 37.15 |
| Bra039400.1-P | Field mustard | nucleus | 39.9 | 36.95 |
| CDY07089 | Canola | nucleus | 39.9 | 36.95 |
| AT3G13460.1 | Thale cress | cytosol | 41.77 | 36.88 |
| CDX82538 | Canola | nucleus | 39.73 | 36.56 |
| VIT_08s0007g07450.t01 | Wine grape | cytosol | 42.95 | 36.46 |
| Solyc01g028860.2.1 | Tomato | nucleus | 43.63 | 36.4 |
| Bra001506.1-P | Field mustard | nucleus | 39.39 | 36.31 |
| KRH43005 | Soybean | nucleus | 43.46 | 36.21 |
| CDX75712 | Canola | nucleus | 38.71 | 35.96 |
| KRH59123 | Soybean | nucleus | 43.12 | 35.88 |
| Bra014253.1-P | Field mustard | cytosol | 18.0 | 35.57 |
| Bra018951.1-P | Field mustard | cytosol | 15.62 | 35.52 |
| PGSC0003DMT400061684 | Potato | endoplasmic reticulum, plasma membrane | 43.46 | 34.78 |
| Bra038524.1-P | Field mustard | cytosol | 12.9 | 33.78 |
| TraesCS4A01G031600.2 | Wheat | cytosol | 41.77 | 33.74 |
| KRG94807 | Soybean | nucleus | 37.01 | 33.08 |
| KRH70155 | Soybean | nucleus | 35.31 | 33.02 |
| KRH06717 | Soybean | nucleus | 36.84 | 32.73 |
| TraesCS7A01G276800.3 | Wheat | nucleus | 31.92 | 30.08 |
| TraesCS1A01G044500.1 | Wheat | nucleus | 32.09 | 29.44 |
| TraesCS7A01G291700.1 | Wheat | cytosol | 28.35 | 28.31 |
| TraesCS3A01G267700.1 | Wheat | nucleus | 29.03 | 24.75 |
| TraesCS4A01G125600.3 | Wheat | cytosol, nucleus, plastid | 29.03 | 23.78 |
| TraesCS2A01G011400.1 | Wheat | nucleus | 27.5 | 22.78 |
| TraesCS3A01G199100.2 | Wheat | cytosol | 25.98 | 22.21 |
| TraesCS1A01G105700.1 | Wheat | cytosol | 21.73 | 18.23 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G431200.1 | EnsemblPlantsGene:TraesCS5A01G431200 | Gene3D:3.10.590.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR007275 | InterPro:YTH_domain | PANTHER:PTHR12357 | PANTHER:PTHR12357:SF34 | PFAM:PF04146 |
| PFscan:PS50882 | SEG:seg | MapMan:16.5.2.1 | : | : | : |
Description
No Description!
Coordinates
chr5A:-:615185133..615188635
Molecular Weight (calculated)
64147.0 Da
IEP (calculated)
6.416
GRAVY (calculated)
-0.743
Length
589 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAAAAAD QATNLLQKLS LDAKTEAIDA PAAKEKASGG LGGKLNGVAA TRNPRASEQW ANPQDYSDAS MYYGAYPAAY YCAGWGDYSM YLNQDGVETP
101: TAGAYGDMYC YPQYGHDGQM YGSQQYQYPS SYHQPQNTAT SAPKATANSV DEVKGLKKTS TPLNPSGNNG SYLNQSSRPA YPWYGGQIYQ GKQQKPSSGN
201: PTSTDSNPKS KVQSKNQNTQ PLPPLMSLPN SPVASMYATN GMYNSNAYGG FWYGSQFYGP GMYGGWNNLS DGKYKPRGRT AYGSYGFPNE NLDGLNELKR
301: GPRSGLYNNQ QGFGPAAVTA VKAQDVSATD GSNAVVQDQY NGSDLADTYE NAKCFIIKSY SEDDVHKSIK YNVWASTPNG NKKLDSAYLE AKSVNSPVFL
401: LFSVNTSGQF VGLAEMVGQV DFDKTVEHWQ QDKWTGCFPV KWHIVKDIPN NLLKHIILEY NENKPVTNSR DTQEVKLEQG LQVLKIFKDH VSKTSILDDF
501: SFYDNREKIM QERKSQRQQQ LKKITSPKLL PTVDNTENDS GNAQESQKPE VTGENKSVVE DNVEAAAVSG VAPKDANPTA ASLAVANGC
101: TAGAYGDMYC YPQYGHDGQM YGSQQYQYPS SYHQPQNTAT SAPKATANSV DEVKGLKKTS TPLNPSGNNG SYLNQSSRPA YPWYGGQIYQ GKQQKPSSGN
201: PTSTDSNPKS KVQSKNQNTQ PLPPLMSLPN SPVASMYATN GMYNSNAYGG FWYGSQFYGP GMYGGWNNLS DGKYKPRGRT AYGSYGFPNE NLDGLNELKR
301: GPRSGLYNNQ QGFGPAAVTA VKAQDVSATD GSNAVVQDQY NGSDLADTYE NAKCFIIKSY SEDDVHKSIK YNVWASTPNG NKKLDSAYLE AKSVNSPVFL
401: LFSVNTSGQF VGLAEMVGQV DFDKTVEHWQ QDKWTGCFPV KWHIVKDIPN NLLKHIILEY NENKPVTNSR DTQEVKLEQG LQVLKIFKDH VSKTSILDDF
501: SFYDNREKIM QERKSQRQQQ LKKITSPKLL PTVDNTENDS GNAQESQKPE VTGENKSVVE DNVEAAAVSG VAPKDANPTA ASLAVANGC
001: MSTVAPPADQ AADVLKKLSL DSKSRTLEIP EPTKKTGVYQ YGAMDSNGQV PSFDRSLSPM LPSDALDPSV FYVPNVYQQP YYYGYGSDYT GYTNSESVDM
101: TSGAYGENAS LVYPQGYGYA AFPYSPATSP APQLGGDGQL YGAQQYQYPF PLTASSGPFA SSVPASTQSK LSTNKAANSA SAGIPKGMNG SAPVKPLNQS
201: ALYGNSALGG GLAAGYQDPR YSYDGFYTPV SWHDGSNFSD VQRSVSGSGV ASSYSKANNN VPATRNQNSS SNSHYTSMYQ PASMTGYAAQ GYYDRVSPNK
301: SYGQYGSTVR SGMGYGSSGY GSRTNERGWL NTDNKYRSRG RGNSYFYGNE NIDGLNELNR GPRAKGTKAT EEVSSEEVKK QTFDESNTEE TVTCVLPDRE
401: ECNRDDFPVE YKDAKFFIIK SYSEDDVHKS IKYNVWASTP NGNKKLDAAY QEAQQKSSGC PVFLFFSVNA SGQFIGLAEM KGPVDFNKNI EYWQQDKWTG
501: SFPLKWHILK DVPNSLLKHI TLEYNENKPV TNSRDTQEVK LEQGLKVVKI FKEHNSKTCI LDDFSFYEAR QKTILEKKAK QQQSQKQARE ENGLGRKNQ
101: TSGAYGENAS LVYPQGYGYA AFPYSPATSP APQLGGDGQL YGAQQYQYPF PLTASSGPFA SSVPASTQSK LSTNKAANSA SAGIPKGMNG SAPVKPLNQS
201: ALYGNSALGG GLAAGYQDPR YSYDGFYTPV SWHDGSNFSD VQRSVSGSGV ASSYSKANNN VPATRNQNSS SNSHYTSMYQ PASMTGYAAQ GYYDRVSPNK
301: SYGQYGSTVR SGMGYGSSGY GSRTNERGWL NTDNKYRSRG RGNSYFYGNE NIDGLNELNR GPRAKGTKAT EEVSSEEVKK QTFDESNTEE TVTCVLPDRE
401: ECNRDDFPVE YKDAKFFIIK SYSEDDVHKS IKYNVWASTP NGNKKLDAAY QEAQQKSSGC PVFLFFSVNA SGQFIGLAEM KGPVDFNKNI EYWQQDKWTG
501: SFPLKWHILK DVPNSLLKHI TLEYNENKPV TNSRDTQEVK LEQGLKVVKI FKEHNSKTCI LDDFSFYEAR QKTILEKKAK QQQSQKQARE ENGLGRKNQ
Arabidopsis Description
ECT4evolutionarily conserved C-terminal region 4 [Source:TAIR;Acc:AT1G55500]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.