Factsheet for HORVU5Hr1G104380.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, vacuole
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
TargetP:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G017240.4
HORVU1Hr1G017380.4
HORVU2Hr1G027080.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13460.1	HORVU1Hr1G017240.4	AT3G17510.1	16113215
AT3G13460.1	HORVU1Hr1G017380.4	AT3G17510.1	16113215
AT3G13460.1	HORVU2Hr1G027080.5	AT3G17510.1	16113215

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G439100.1	Wheat	nucleus	82.75	93.03
TraesCS5A01G431200.1	Wheat	nucleus	82.6	92.7
TraesCS5B01G433000.1	Wheat	cytosol	83.36	92.45
Os07t0170300-01	Rice	plasma membrane	50.98	55.98
CDY57677	Canola	mitochondrion	13.92	53.8
HORVU5Hr1G104390.3	Barley	plastid	54.77	52.62
Zm00001d007890_P002	Maize	mitochondrion	49.17	49.77
Zm00001d018896_P002	Maize	mitochondrion	49.47	46.32
Bra004105.1-P	Field mustard	nucleus	26.48	44.19
CDY07437	Canola	nucleus	27.84	43.71
CDY50448	Canola	cytosol	16.79	43.53
CDY39299	Canola	nucleus	27.84	43.5
Bra008509.1-P	Field mustard	cytosol	27.23	42.55
CDY56132	Canola	nucleus	28.29	41.83
CDY52966	Canola	cytosol	28.14	41.52
CDX91541	Canola	mitochondrion	10.14	41.1
CDY21154	Canola	nucleus	25.11	40.79
Bra031960.1-P	Field mustard	nucleus	24.21	40.4
Bra036423.1-P	Field mustard	nucleus	24.81	40.39
CDY29972	Canola	nucleus	24.96	40.24
AT3G03950.3	Thale cress	cytosol	26.02	40.19
CDY69959	Canola	nucleus	24.05	39.85
CDY42891	Canola	nucleus	24.05	39.75
CDY50867	Canola	nucleus	24.05	39.75
AT5G61020.1	Thale cress	cytosol	29.2	38.99
AT1G55500.5	Thale cress	cytosol	35.25	38.51
HORVU5Hr1G094950.6	Barley	cytosol, nucleus	38.43	38.2
VIT_06s0004g00200.t01	Wine grape	nucleus	40.7	38.16
Solyc01g028860.2.1	Tomato	nucleus	39.79	37.25
CDY43989	Canola	nucleus	35.7	37.22
CDY23602	Canola	nucleus	35.1	37.18
VIT_08s0007g07450.t01	Wine grape	cytosol	38.88	37.03
AT3G13460.1	Thale cress	cytosol	37.37	37.03
CDY24182	Canola	nucleus	30.26	36.97
Bra027432.1-P	Field mustard	nucleus	35.4	36.91
CDY07089	Canola	nucleus	35.25	36.64
KRH43005	Soybean	nucleus	39.18	36.63
CDX82538	Canola	nucleus	35.4	36.56
Bra039400.1-P	Field mustard	nucleus	35.1	36.48
Bra001506.1-P	Field mustard	nucleus	35.25	36.46
CDX75712	Canola	nucleus	34.95	36.44
KRH59123	Soybean	nucleus	38.88	36.3
PGSC0003DMT400061684	Potato	endoplasmic reticulum, plasma membrane	39.64	35.6
Bra014253.1-P	Field mustard	cytosol	15.58	34.56
Bra018951.1-P	Field mustard	cytosol	13.46	34.36
Bra038524.1-P	Field mustard	cytosol	11.5	33.78
HORVU4Hr1G072940.4	Barley	cytosol	37.67	33.56
KRG94807	Soybean	nucleus	33.43	33.54
KRH70155	Soybean	nucleus	31.62	33.17
KRH06717	Soybean	nucleus	33.13	33.03
HORVU1Hr1G008330.2	Barley	nucleus	30.86	31.78
HORVU7Hr1G069070.2	Barley	cytosol	26.48	29.66
HORVU7Hr1G058250.46	Barley	cytosol, plastid	19.52	27.22
HORVU4Hr1G052390.3	Barley	golgi	25.72	22.67
HORVU3Hr1G062620.8	Barley	mitochondrion	26.48	22.58
HORVU2Hr1G023660.2	Barley	nucleus	24.21	22.57
HORVU3Hr1G045890.2	Barley	endoplasmic reticulum, peroxisome, plasma membrane	22.09	22.32
HORVU2Hr1G001810.8	Barley	cytosol	23.75	19.92

Protein Annotations

EnsemblPlants:HORVU5Hr1G104380.1	EnsemblPlantsGene:HORVU5Hr1G104380	Gene3D:3.10.590.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR007275	InterPro:YTH_domain	PANTHER:PTHR12357	PANTHER:PTHR12357:SF34	PFAM:PF04146
PFscan:PS50882	SEG:seg	UniParc:UPI000B47E74D	UniProt:A0A287SK45	MapMan:16.5.2.1	:

Description

No Description!

Coordinates

chrchr5H:+:619072133..619076265

Molecular Weight (calculated)

71576.3 Da

IEP (calculated)

7.271

GRAVY (calculated)

-0.573

Length

661 amino acids

Sequence
(BLAST)

001: SPNYLSLLSV SLSSPLSHLP KRIASLGFLP GFFPRAAAAA AATPLLRIAA MAAAATAADQ ATNLLQKLSL DAKTEAIDAP AAKEKATGGL GGKLNGVAAT
101: RNPRGAEQWA NPQDYSDASM YYGAYPAAYY CAGWGDYSMY LSQDGVETPT AGAYGDMYCY PQYGPDGQMY GSQQYQYSSS YHQPQNTATK PQYKSKTDKL
201: APSKEISSTV ADPLHAIVSA APKATSNSID DVKGLKPSGN NGSYLNPSSR PAYPFYGGQI YQGKQQMPSI GNPTSTDSNP KSKVQLKNQN TQPLPPLMSL
301: PNSPVASMYA GNGMYNSNAY GGFWYGSQFY GPGMYGGWNN LSDGKYKPRG RTAYGSYGFP NENLDGLNEL KRGPRSGLSN IQQGFGPAAA TAVKAQDVSA
401: TDGSNAVVQD QYNRPDFADT YENAKFFIIK SYSEDDVHKS IKYNVWASTP NGNKKLDSAY VEAKSVNSPV FLLFSVNTSG QFVGLAEMVG QVDFDKTVEH
501: WQQDKWTGCF PVKWHIVKDI PNNLLKHIIL EYNENKPVTN SRDTQEVKLE QGLQVLKIFK DHVSKTSILD DFIFYDNREK IMQERKSQRQ HQLKKITSPK
601: LLPTVDNAEN DSGNAQEPQK PEVTGEEESA AEDNVVAAAV TGVAPKDANP TAASLAVANG C

Best Arabidopsis Sequence Match ( AT3G13460.1 )
(BLAST)

001: MATVAPPADQ ATDLLQKLSL DSPAKASEIP EPNKKTAVYQ YGGVDVHGQV PSYDRSLTPM LPSDAADPSV CYVPNPYNPY QYYNVYGSGQ EWTDYPAYTN
101: PEGVDMNSGI YGENGTVVYP QGYGYAAYPY SPATSPAPQL GGEGQLYGAQ QYQYPNYFPN SGPYASSVAT PTQPDLSANK PAGVKTLPAD SNNVASAAGI
201: TKGSNGSAPV KPTNQATLNT SSNLYGMGAP GGGLAAGYQD PRYAYEGYYA PVPWHDGSKY SDVQRPVSGS GVASSYSKSS TVPSSRNQNY RSNSHYTSVH
301: QPSSVTGYGT AQGYYNRMYQ NKLYGQYGST GRSALGYGSS GYDSRTNGRG WAATDNKYRS WGRGNSYYYG NENNVDGLNE LNRGPRAKGT KNQKGNLDDS
401: LEVKEQTGES NVTEVGEADN TCVVPDREQY NKEDFPVDYA NAMFFIIKSY SEDDVHKSIK YNVWASTPNG NKKLAAAYQE AQQKAGGCPI FLFFSVNASG
501: QFVGLAEMTG PVDFNTNVEY WQQDKWTGSF PLKWHIVKDV PNSLLKHITL ENNENKPVTN SRDTQEVKLE QGLKIVKIFK EHSSKTCILD DFSFYEVRQK
601: TILEKKAKQT QKQVSEEKVT DEKKESATAE SASKESPAAV QTSSDVKVAE NGSVAKPVTG DVVANGC

Arabidopsis Description

ECT2ECT2 [Source:UniProtKB/TrEMBL;Acc:A0A178VBC2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.