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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • plasma membrane 1
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
EpiLoc:plasma membrane
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7B01G182100.2 Wheat cytosol 93.56 93.24
TraesCS7A01G291700.1 Wheat cytosol 93.05 93.05
Zm00001d002008_P001 Maize cytosol 10.85 87.67
TraesCS7D01G285000.1 Wheat endoplasmic reticulum 90.0 86.76
EES14722 Sorghum nucleus 72.54 72.05
Zm00001d049360_P004 Maize extracellular 71.69 70.97
Zm00001d024339_P001 Maize extracellular 70.85 70.61
Os08t0224200-01 Rice mitochondrion 73.56 70.11
CDY51902 Canola cytosol 14.24 54.19
Zm00001d008913_P001 Maize cytosol, nucleus, peroxisome 32.71 48.37
HORVU1Hr1G008330.2 Barley nucleus 46.44 42.68
VIT_09s0054g01600.t01 Wine grape nucleus 45.76 40.54
Bra039366.1-P Field mustard nucleus 40.85 40.1
Bra034710.1-P Field mustard nucleus 40.34 40.07
KRH46969 Soybean endoplasmic reticulum, extracellular 43.9 40.03
CDY43378 Canola nucleus 41.53 39.9
CDY24224 Canola nucleus 41.19 39.58
CDY23562 Canola nucleus 41.53 39.52
KRH44697 Soybean mitochondrion 44.07 39.51
Zm00001d047072_P001 Maize mitochondrion 32.71 39.47
AT3G13060.2 Thale cress nucleus 42.37 39.43
CDY44025 Canola nucleus 41.53 39.39
GSMUA_Achr1P10560_001 Banana nucleus 28.31 37.53
VIT_01s0010g03690.t01 Wine grape cytosol 34.75 35.84
Bra006780.1-P Field mustard cytosol 29.32 33.99
CDX88661 Canola nucleus 29.32 33.92
CDY58572 Canola nucleus 28.98 33.73
HORVU7Hr1G058250.46 Barley cytosol, plastid 26.95 33.54
AT5G58190.2 Thale cress nucleus 29.83 33.33
Solyc05g032850.2.1 Tomato nucleus 34.07 33.28
CDY32718 Canola nucleus 29.83 33.27
CDY02802 Canola nucleus 29.49 32.58
Bra020382.1-P Field mustard nucleus 30.0 32.01
VIT_11s0065g00160.t01 Wine grape nucleus 36.44 29.25
HORVU5Hr1G094950.6 Barley cytosol, nucleus 30.85 27.37
CDX90116 Canola nucleus 23.9 27.06
Bra010911.1-P Field mustard nucleus 23.9 27.06
CDY67303 Canola nucleus 23.9 27.06
AT1G27960.1 Thale cress cytosol 24.58 26.9
HORVU5Hr1G104380.1 Barley plastid 29.66 26.48
CDY11758 Canola nucleus, plastid 24.75 26.35
HORVU5Hr1G104390.3 Barley plastid 29.15 25.0
HORVU4Hr1G072940.4 Barley cytosol 31.02 24.66
HORVU4Hr1G052390.3 Barley golgi 28.14 22.13
HORVU3Hr1G062620.8 Barley mitochondrion 27.63 21.03
HORVU2Hr1G023660.2 Barley nucleus 24.75 20.59
HORVU3Hr1G045890.2 Barley endoplasmic reticulum, peroxisome, plasma membrane 22.03 19.88
HORVU2Hr1G001810.8 Barley cytosol 25.25 18.91
Protein Annotations
EnsemblPlants:HORVU7Hr1G069070.2EnsemblPlantsGene:HORVU7Hr1G069070Gene3D:3.10.590.10GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0005488InterPro:IPR007275InterPro:YTH_domainPANTHER:PTHR12357PANTHER:PTHR12357:SF64PFAM:PF04146
PFscan:PS50882UniParc:UPI0002957DBFUniProt:M0V0B7MapMan:16.5.2.1::
Description
No Description!
Coordinates
chrchr7H:+:367194699..367199111
Molecular Weight (calculated)
65224.3 Da
IEP (calculated)
6.307
GRAVY (calculated)
-0.730
Length
590 amino acids
Sequence
(BLAST)
001: MALSGGDSSG FVDCTILLQS EIVVDNNPSK STNTKEQIIS ITAEKTSASD ARGSTSLKSP KGAQEKANFL GKGGEQPYVY QPNVYAPQPQ TVYSGGYINP
101: SGQWEEYPYY VSMEGVHSAS PSIMLSPGYA NNPQMMYGAY SPVSTVGEGQ SYSPMHFPFS NPYYQPPASL SMGYSNSGTG MSQGDPMLQQ EYFLPDGLLY
201: SPTAVYRQPF GSYNRAATQP SNASGLFGQG NAPLAFGMQH GTMYNSGSYK AHQQASKYGG TTPNWGSAGR RFNNFDCNSS QQRGSMPFNI QNGALEFLNE
301: QNRGPRAAKP KKQDRDNSLV DDKSEKTTLL IDSELYNRPD FATEYKDAIF FVIKSYTEDH VHRSIKYNVW ASTASGNRKL DSAYRAAKQK EDHSRVFLFF
401: SVNGSGQFCG VAEMIGPVDF DRSVDYWQQD KWSGQFPVKW HIIKDVPNTL LRHITLENND NKPVTNSRDT QEVKLEYGLQ MLSIFKNHEA ETTIVEDFDF
501: YEQREEALKE NRRQQQPGSA ESLKPTDAKA VGSSVTHIVD SFSRSVQLKE IEKSDKRTDG AISVNGSQTA TVKAEKSTAN KTTGSVEESS
Best Arabidopsis Sequence Match ( AT3G13060.1 )
(BLAST)
001: MATTQSHTSD LTSEEQPASL DIMKEQTVPA NNETSASFKS SQEAPVVVHP AKVAPLTGPY GLAGDFAGHL PSSILSPQAQ GFYYRGYENP TGEWDEYSSY
101: VNVEGLDITS PVGFNENASL VYQTGYGYNP QMPYGPYSPA ASPLPSEGQL YSPQQFPFSG ASPYYQQVVP PSMQYITSPT QPELTSLVGV DQQGDNIGPR
201: QSYHPHPIGP FNGNQPNLGF PEWQQGFDGG IWSDWSKPSD MHRHSSSISP ALSPQPLGSY GSYGQNIPMG SQRQRSFYGF GSGSNSYNRG YMHSGGRGQG
301: SNYGSRLISN VGMGNQGWIG VDNSRGRGRV SDPSLGGAYN GTFDILNEQN RGPRASKPKT QVLEELDSAA DSKKNNKGSA KEHEESNNAD FVTDYTNAKL
401: FIIKSYSEDN VHKSIKYNVW ASTPNGNKKL DAAYREAKDE KEPCPLFLLF SVNASSQFCG VAEMVGPVDF EKSVDYWQQD KWSGQFPVKW HIIKDVPNSQ
501: FRHIILENND NKPVTNSRDT QEVSSNLCLS SFLVHKIPLL SHTITTTKNY R
Arabidopsis Description
ECT5Evolutionarily conserved C-terminal region 5 [Source:UniProtKB/TrEMBL;Acc:Q0WR25]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.